Detailed information NTG0407751

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY45_RS15495
• Genome accession: NZ_CP046785
• Coordinates: 3052578..3053999 (+)
• Length: 473 a.a.
• NCBI ID: WP_021449193.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2013V-1136
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3047578..3058999

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY45_RS15475	-	3047637..3048389 (-)	753	WP_192868606.1	adenosylcobinamide-GDP ribazoletransferase	-
GPY45_RS15480	cobT	3048434..3049477 (-)	1044	WP_025553309.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY45_RS15485	-	3050161..3050856 (+)	696	WP_017448627.1	NAD(P)H-binding protein	-
GPY45_RS15490	-	3051049..3052422 (+)	1374	WP_005486634.1	L-cystine transporter	-
GPY45_RS15495	sbcB	3052578..3053999 (+)	1422	WP_021449193.1	exodeoxyribonuclease I	Machinery gene
GPY45_RS15500	-	3054055..3054429 (+)	375	WP_005455074.1	CidA/LrgA family protein	-
GPY45_RS15505	-	3054431..3055108 (+)	678	WP_020840482.1	LrgB family protein	-
GPY45_RS15510	cdd	3055473..3056360 (+)	888	WP_025505218.1	cytidine deaminase	-
GPY45_RS15515	purT	3056508..3057683 (+)	1176	WP_023584297.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
GPY45_RS15520	-	3057785..3058435 (-)	651	WP_005480776.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54645.97 Da
• Isoelectric Point: 4.9813

>NTDB_id=407751 GPY45_RS15495 WP_021449193.1 3052578..3053999(+) (sbcB) [Vibrio parahaemolyticus strain 2013V-1136]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=407751 GPY45_RS15495 WP_021449193.1 3052578..3053999(+) (sbcB) [Vibrio parahaemolyticus strain 2013V-1136]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGATCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.915	100	0.799