Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY45_RS08190 Genome accession   NZ_CP046785
Coordinates   1599024..1599542 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 2013V-1136     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1594024..1604542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY45_RS08180 gshA 1596759..1598327 (+) 1569 WP_089203078.1 glutamate--cysteine ligase -
  GPY45_RS08185 - 1598352..1598957 (+) 606 WP_015297256.1 hypothetical protein -
  GPY45_RS08190 luxS 1599024..1599542 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  GPY45_RS08195 - 1599604..1600884 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  GPY45_RS08200 - 1601010..1601804 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  GPY45_RS08205 ffh 1602017..1603399 (+) 1383 WP_005462555.1 signal recognition particle protein -
  GPY45_RS08210 rpsP 1603609..1603857 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY45_RS08215 rimM 1603886..1604434 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=407742 GPY45_RS08190 WP_005462534.1 1599024..1599542(+) (luxS) [Vibrio parahaemolyticus strain 2013V-1136]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407742 GPY45_RS08190 WP_005462534.1 1599024..1599542(+) (luxS) [Vibrio parahaemolyticus strain 2013V-1136]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment