Detailed information NTG0407739

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY45_RS08060
• Genome accession: NZ_CP046785
• Coordinates: 1576438..1577427 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 2013V-1136
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1571438..1582427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY45_RS08025	ftsB	1571446..1571727 (+)	282	WP_005455577.1	cell division protein FtsB	-
GPY45_RS08030	ispD	1571729..1572433 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY45_RS08035	ispF	1572451..1572927 (+)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY45_RS08040	truD	1572974..1574017 (+)	1044	WP_089203083.1	tRNA pseudouridine(13) synthase TruD	-
GPY45_RS08045	surE	1574017..1574793 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
GPY45_RS08050	-	1574793..1575419 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY45_RS08055	-	1575434..1576357 (+)	924	WP_089203082.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY45_RS08060	rpoS	1576438..1577427 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY45_RS08065	mutS	1577506..1580067 (-)	2562	WP_089203081.1	DNA mismatch repair protein MutS	-
GPY45_RS08070	pncC	1580152..1580634 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
GPY45_RS08075	recA	1580835..1581878 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=407739 GPY45_RS08060 WP_005478537.1 1576438..1577427(+) (rpoS) [Vibrio parahaemolyticus strain 2013V-1136]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=407739 GPY45_RS08060 WP_005478537.1 1576438..1577427(+) (rpoS) [Vibrio parahaemolyticus strain 2013V-1136]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGTAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACAATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCCAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851