Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | GPY45_RS06880 | Genome accession | NZ_CP046785 |
| Coordinates | 1349697..1350212 (+) | Length | 171 a.a. |
| NCBI ID | WP_017449464.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 2013V-1136 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1344697..1355212
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY45_RS06860 | - | 1344830..1347400 (-) | 2571 | WP_089203446.1 | penicillin-binding protein 1A | - |
| GPY45_RS06865 | pilM | 1347543..1348559 (+) | 1017 | WP_017449463.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| GPY45_RS06870 | pilN | 1348543..1349121 (+) | 579 | WP_005480484.1 | PilN domain-containing protein | Machinery gene |
| GPY45_RS06875 | pilO | 1349114..1349707 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY45_RS06880 | pilP | 1349697..1350212 (+) | 516 | WP_017449464.1 | pilus assembly protein PilP | Machinery gene |
| GPY45_RS06885 | pilQ | 1350244..1351992 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| GPY45_RS06890 | aroK | 1352181..1352699 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| GPY45_RS06895 | aroB | 1352731..1353831 (+) | 1101 | WP_031411312.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18828.02 Da Isoelectric Point: 10.5909
>NTDB_id=407732 GPY45_RS06880 WP_017449464.1 1349697..1350212(+) (pilP) [Vibrio parahaemolyticus strain 2013V-1136]
MKNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPGVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
MKNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPGVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=407732 GPY45_RS06880 WP_017449464.1 1349697..1350212(+) (pilP) [Vibrio parahaemolyticus strain 2013V-1136]
ATGAAAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAAAGCCAGGCGCGGCGAGATGTGGAGAAACTCAAACCTGCTGACAAATACATCGCAGTAGCGT
ATGCCCCAGGAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTTCAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGAAAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAAAGCCAGGCGCGGCGAGATGTGGAGAAACTCAAACCTGCTGACAAATACATCGCAGTAGCGT
ATGCCCCAGGAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTTCAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
82.456 |
100 |
0.825 |
| pilP | Vibrio cholerae strain A1552 |
58.721 |
100 |
0.591 |