Detailed information NTG0407723

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MS10711_RS14380
• Genome accession: NZ_CP058922
• Coordinates: 2914244..2915236 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS10711
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2909244..2920236

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MS10711_RS14360 (MS10711_2799)	ygbM	2909875..2910651 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
MS10711_RS14365 (MS10711_2800)	ygbN	2910740..2912104 (+)	1365	WP_000104433.1	GntP family transporter	-
MS10711_RS14370 (MS10711_2801)	-	2912247..2913290 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
MS10711_RS14375 (MS10711_2802)	-	2913515..2914066 (+)	552	WP_001179442.1	flavodoxin family protein	-
MS10711_RS14380 (MS10711_2803)	rpoS	2914244..2915236 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
MS10711_RS14385 (MS10711_2804)	nlpD	2915299..2916393 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
MS10711_RS14390 (MS10711_2805)	pcm	2916578..2917204 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
MS10711_RS14395 (MS10711_2806)	surE	2917198..2917959 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
MS10711_RS14400 (MS10711_2807)	truD	2917940..2918989 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
MS10711_RS14405 (MS10711_2808)	ispF	2918986..2919465 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MS10711_RS14410 (MS10711_2809)	ispD	2919465..2920175 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=407723 MS10711_RS14380 WP_000081550.1 2914244..2915236(-) (rpoS) [Escherichia coli strain MS10711]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=407723 MS10711_RS14380 WP_000081550.1 2914244..2915236(-) (rpoS) [Escherichia coli strain MS10711]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715