Detailed information NTG0407720

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GPY45_RS03735
• Genome accession: NZ_CP046785
• Coordinates: 735491..736498 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 2013V-1136
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 730491..741498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY45_RS03710	rplC	731025..731654 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
GPY45_RS03715	rpsJ	731669..731980 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
GPY45_RS03720	rpmE	732438..732659 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
GPY45_RS03730	priA	732954..735158 (+)	2205	WP_089202852.1	primosomal protein N'	-
GPY45_RS03735	cytR	735491..736498 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
GPY45_RS03740	ftsN	736675..737220 (+)	546	WP_005481405.1	cell division protein FtsN	-
GPY45_RS03745	hslV	737385..737936 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GPY45_RS03750	hslU	737960..739291 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GPY45_RS03755	-	739476..740393 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GPY45_RS03760	rraA	740470..740982 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
GPY45_RS03765	zapB	741087..741329 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=407720 GPY45_RS03735 WP_005481416.1 735491..736498(+) (cytR) [Vibrio parahaemolyticus strain 2013V-1136]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=407720 GPY45_RS03735 WP_005481416.1 735491..736498(+) (cytR) [Vibrio parahaemolyticus strain 2013V-1136]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCAATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTACACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCCAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTGGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904