Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY39_RS24525 Genome accession   NZ_CP046784
Coordinates   1499882..1500979 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain 2013V-1181     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1494882..1505979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY39_RS24490 - 1495019..1495996 (+) 978 WP_021449439.1 Gfo/Idh/MocA family oxidoreductase -
  GPY39_RS24495 - 1496070..1497407 (-) 1338 WP_021449440.1 MATE family efflux transporter -
  GPY39_RS24500 - 1497530..1497844 (-) 315 WP_005453573.1 DUF496 family protein -
  GPY39_RS24510 - 1498171..1498386 (+) 216 WP_005477197.1 hypothetical protein -
  GPY39_RS24515 - 1498563..1499213 (+) 651 WP_017447360.1 YceH family protein -
  GPY39_RS24520 - 1499210..1499530 (+) 321 WP_021449441.1 GIY-YIG nuclease family protein -
  GPY39_RS24525 luxP 1499882..1500979 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY39_RS24530 luxQ 1500979..1503555 (+) 2577 WP_005477121.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  GPY39_RS24535 slyA 1503767..1504222 (+) 456 WP_017447361.1 transcriptional regulator SlyA -
  GPY39_RS24540 - 1504260..1505315 (+) 1056 WP_015313427.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=407713 GPY39_RS24525 WP_005463467.1 1499882..1500979(+) (luxP) [Vibrio parahaemolyticus strain 2013V-1181]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=407713 GPY39_RS24525 WP_005463467.1 1499882..1500979(+) (luxP) [Vibrio parahaemolyticus strain 2013V-1181]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGCCCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTTCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTAGAGTTTGGCAAGCAGTTCCCAAAAAATACCCATTACAGTGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGAGCCGTTGAAGCGCTGTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTTTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment