Detailed information NTG0407710

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GPY39_RS15750
• Genome accession: NZ_CP046783
• Coordinates: 3104780..3105787 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 2013V-1181
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3099780..3110787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY39_RS15720	zapB	3099951..3100193 (+)	243	WP_005481417.1	cell division protein ZapB	-
GPY39_RS15725	rraA	3100298..3100810 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
GPY39_RS15730	-	3100887..3101804 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GPY39_RS15735	hslU	3101989..3103320 (-)	1332	WP_021449544.1	HslU--HslV peptidase ATPase subunit	-
GPY39_RS15740	hslV	3103344..3103895 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GPY39_RS15745	ftsN	3104059..3104604 (-)	546	WP_024703418.1	cell division protein FtsN	-
GPY39_RS15750	cytR	3104780..3105787 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
GPY39_RS15755	priA	3106120..3108324 (-)	2205	WP_021449555.1	primosomal protein N'	-
GPY39_RS15765	rpmE	3108619..3108840 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
GPY39_RS15770	rpsJ	3109298..3109609 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
GPY39_RS15775	rplC	3109624..3110253 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=407710 GPY39_RS15750 WP_005481416.1 3104780..3105787(-) (cytR) [Vibrio parahaemolyticus strain 2013V-1181]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=407710 GPY39_RS15750 WP_005481416.1 3104780..3105787(-) (cytR) [Vibrio parahaemolyticus strain 2013V-1181]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904