Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SSUD9_RS03400 Genome accession   NC_017620
Coordinates   673027..675240 (+) Length   737 a.a.
NCBI ID   WP_002937139.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 668027..680240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS03395 (SSUD9_0682) cls 671324..672871 (+) 1548 WP_002937141.1 cardiolipin synthase -
  SSUD9_RS03400 (SSUD9_0683) recJ 673027..675240 (+) 2214 WP_002937139.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SSUD9_RS03405 (SSUD9_0684) - 675219..676349 (+) 1131 WP_002937137.1 DUF3114 domain-containing protein -
  SSUD9_RS03410 (SSUD9_0685) - 676403..676915 (+) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  SSUD9_RS03415 (SSUD9_0686) metA 677019..677960 (+) 942 WP_002937134.1 homoserine O-acetyltransferase MetA -
  SSUD9_RS03420 (SSUD9_0687) - 677970..678644 (+) 675 WP_002937132.1 DnaD domain-containing protein -
  SSUD9_RS03425 (SSUD9_0688) - 678646..679329 (+) 684 WP_002937128.1 tRNA (adenine(22)-N(1))-methyltransferase -
  SSUD9_RS03430 (SSUD9_0689) - 679319..680113 (+) 795 WP_002937125.1 Nif3-like dinuclear metal center hexameric protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82676.32 Da        Isoelectric Point: 4.5002

>NTDB_id=40770 SSUD9_RS03400 WP_002937139.1 673027..675240(+) (recJ) [Streptococcus suis D9]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKN
VERKDVVQAIYDEAKTMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGRDNKKP
VFYIRDFQVESARTMGQNNAHLKLRISKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAVYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKDAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=40770 SSUD9_RS03400 WP_002937139.1 673027..675240(+) (recJ) [Streptococcus suis D9]
GTGATAAAACCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGATCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGCATGACCTCGGCATCTATTCTGAAAGAAACTTTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAACCGTTTCACAGATGGCTATGGGCCGAATCAGTCAGTTTACAAGTATT
TTATCGAGCAACAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAGGGAAATTATCCCTTCAAACATTTGGCGGGCTGCGGTGTGGCTTTTAAATTGGCCTGTGCTCTTCTTG
AAACTGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGACGATC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAAATTGCTCTCATGATTGACAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCAGGATAGACCGGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCAGCAACCTGTTATCG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGGTCGGCTCGTTCGGTTGAAGCAGTTGACATTTTCAAGGCTCTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAACT
TGCTCTGACCTTGACAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTACGGCAGGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTGGAATCAGCAAGGACCATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAG
TAAAGGTGCGGCAGGTTTTGATGTGGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAGCAACATCCTATTCCTGCTGGAGTCCCAATTTTGGATATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAACGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAGACTATTTACCAATTTGATGAGTTTGATGTTCGCTACAAACTGAAAGATTTGGCTGTTTACTTAAAAATTAA
GGACAGTCTATTGGTTAAAATGATTCAGATTTTCCAAGAATTAGAATTTGTCACGATTACGGATGGGGTCATGCGGGTCA
ACAAAGATGCACAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-432)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.69

99.864

0.726
  recJ Bacillus subtilis subsp. subtilis str. 168

38.102

100

0.387

Multiple sequence alignment