Detailed information NTG0407683

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPY39_RS10910
• Genome accession: NZ_CP046783
• Coordinates: 2149669..2153055 (+)
• Length: 1128 a.a.
• NCBI ID: WP_021450000.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2013V-1181
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2144669..2158055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY39_RS10890	erpA	2145023..2145364 (-)	342	WP_005461279.1	iron-sulfur cluster insertion protein ErpA	-
GPY39_RS10895	hemL	2145612..2146907 (+)	1296	WP_005488434.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPY39_RS10900	-	2147245..2148330 (+)	1086	WP_005461253.1	AI-2E family transporter	-
GPY39_RS10905	rsmC	2148417..2149442 (+)	1026	WP_021449999.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPY39_RS10910	chiS	2149669..2153055 (+)	3387	WP_021450000.1	response regulator	Regulator
GPY39_RS10915	-	2153964..2155646 (+)	1683	WP_005461274.1	ABC transporter substrate-binding protein	-
GPY39_RS10920	-	2155817..2156803 (+)	987	WP_005461259.1	ABC transporter permease	-
GPY39_RS10925	-	2156806..2157831 (+)	1026	WP_005461261.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127378.08 Da
• Isoelectric Point: 5.4383

>NTDB_id=407683 GPY39_RS10910 WP_021450000.1 2149669..2153055(+) (chiS) [Vibrio parahaemolyticus strain 2013V-1181]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFEAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGNDIEEARENAQQRYIEGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDINGNVTYSINKDDNYGTNLLTGRYKDSALGKTFKRLTDDVNERRKVNEDYTPVIISDFELEHGRQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIADKNRESSINTLLVGSDQQPRTINTKQDSIQNSLEVIDKALAGQTDVGTYTNGLGEE
IIAAFAPIQTRGITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIQATQTLVARGHFQIPEINLENGDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHMENKVLESELRQRAVVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKYLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDRDQLQKLKELGGEFTRLADKALGNKKDKQDLMREVLVDAMTHA
LDYWESVTGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=407683 GPY39_RS10910 WP_021450000.1 2149669..2153055(+) (chiS) [Vibrio parahaemolyticus strain 2013V-1181]
ATGTTTAAATTCTACAAAAAACAGAAGTTTAAGCGCCTTCAGAGTACGCTGATGACTGCGTTTCTTGTCCTCAGCATTAC
GCCTCTTACCATCACTGCGATTTTTTTCCTGCAATCCCATAGTAAAGATCTGCAAGAACAGAGCACTTCACATCTGCTTT
CTGTTCGTGATACCAAACAACAACAGATCCTCGACTACTTCGAAGCGCAAGAAACCGAAGTCATGGGATTTGTACGCTCT
GAGCTCGCGTATGCCAGTGGTGGTCGTTTTTACGGCCTCGTCAATGCATTTAGCCGTTTAGGCAATGATATTGAAGAAGC
ACGTGAAAATGCTCAGCAACGTTATATCGAAGGCAGCGGTGACCAAATCAAAACATCGATTTTGCCGGAGTCCTCAAATT
ATGTCGGCAGTGAACGTTATCGCTTACTCCACAAACGTTATCACTGGGCATATCTGGAGCTACTCAAACGCTCAGATTTT
AATGATATTTTGCTGGTCGATATTAACGGCAACGTGACTTACTCCATCAACAAAGACGACAACTACGGTACTAACCTACT
AACGGGGCGCTACAAAGACTCGGCATTAGGTAAAACCTTTAAACGTCTAACTGATGACGTCAACGAACGCCGCAAAGTGA
ATGAAGATTATACGCCCGTCATTATTTCTGATTTTGAACTGGAACATGGTCGACAAGTCGCTTGGCTTGGTGCACCTATC
GTTCAGCAAGGCTATTTGCACAGCTATGCTATGTTCCGTTTACCAAACAACGGCATTACCAAGCTGATCGCAGATAAAAA
CCGTGAATCGTCCATCAACACTCTACTGGTCGGCAGCGATCAGCAACCACGTACGATTAATACCAAGCAAGACAGTATTC
AAAACAGTCTTGAAGTCATCGATAAAGCTTTAGCGGGACAAACCGACGTTGGCACCTACACCAATGGACTTGGCGAAGAA
ATTATCGCTGCATTTGCCCCAATTCAAACACGCGGCATTACATGGGCGCTCGTGGTTCAACTTCCAGAAAAAGAGGCGTT
TTCACGCATTCATCAACTGGAAAAACTCTTCGTTATCGCCATGTTAATCGCGATCATTCTTGTGGTGATTGCATCGCATT
ATTTGTCCAACTTCATTACATCACCACTGCTGAAACTGACTTGGGCAGCGGAGAAAGTATCCGCTGGCGACCTCGACGAA
ACGACATTCAATACCGAACGTAAAGATGAAATCGGTCGCTTGGCTATCAGCTTCGAACGTATGCAGCGCTCGATTCGAGA
AAAAATCCAAACCATTAAACAGCAAAACGAAGAACTTGAAAGCAACATCAAGCTGATTCAAAAGCAAAATGATGAGTTGC
AACTGGCTGATAAACTGAAAGATGAGTTCCTCGCAACAACCTCGCACGAATTGCGTACACCGCTACATGGCATGGTTGGG
ATAGCAGAAACCCTTGTGTCAGGAGCAAATGGAGTCATTCCCGCCAGTCAAAAATACCAACTTGATATCATTATCAAGAG
TGGTCAACGCTTAGCTAACCTCGTAGACGATTTATTGGATTACCACAAAATGCGCTATGGCAGCATGGATATCCAAAAAT
CGGCAGTAAGCTTAGCTAGTGCAACACGCTTGGTGCTTGAGCTTTCTAATCACCTGCTAGGCAATAAGACCATTCGCATC
ATCAACCAAGTACCAGCCGACCTTAAAGCCGTTTCGGCCGATCCTCAACGCCTCGAACAAGTGCTGTATAACTTGATTGG
CAATGCCATTAAATACACCTCAGAAGGTAAGATCGTCATTTCCGCTACCATTGTCGACGATCACGTCCGCGTGCAAGTGG
TCGATACTGGTCAGGGGATTCCAGCAGAACATCTTGAGCATATTTTTGAGCCTTTAATTCAAGCTGGTCAAGATGCAAGT
CGCTATCGTCAAGGTGCGGGACTGGGACTATCGATTAGCCGCCAACTGATTGAGTTGATGGGCGGTTCACTTTACGTGAG
CAGTCAGCCGATGGTCGGCACCACGTTTAGTTTCACACTGCCATTGGCCAGCGAAGAGGAAATCCAAGCAACTCAAACCT
TAGTGGCGCGCGGGCACTTTCAAATTCCTGAGATTAATTTGGAAAATGGCGACGACTTATCGCTACCAGAGAACCCTGAT
GGCCCACTGCTTTACGTCGCAGATGATGAACCCGTTAACTTGCGAGTACTGGAAAGCTTCTTGCGCCTCGAAGGATACCG
CGTTCGTACCGTTTCAGATGGCCCAGAAACGCTGGCGCTGGTTGAACAAGAAAAGCCAGAACTGCTGTTACTCGACATTA
TGATGCCCGGCATGAGCGGCTACCAAGTATGTAGTGAACTACGTGAAACCTATGATCATGCTGAGCTACCGATCATTATG
CTCACCGCTCTCAGCCAAACAGAAGACCGAGTGAGAGGCTTTGAAGCAGGCGCGAATGACTACTTATCGAAGCCATTCAA
CAAACAAGAGTTGGCGGCACGTATCCAAGCGCATTTAACAGCAAGTAAAGCGGAAATGCGCCATATGGAAAACAAAGTGC
TGGAGTCAGAGCTTAGACAGCGTGCTGTCGTCGAAGCAAGCCTTCTTGAAACTCAAGGTCGTTTGTTAGAACAGCTAGAA
TCTGCTCCGGAAGCTATTATTTGTCTGCGAGAAGATCAGCGTATTCGTTTTGCCAACGAAGCGGCTTGTAAGCTATTCAA
ACGCAGTTTAGAGCAACTTAAACGCTCGTCAGCTGATGAACTGATCGCACCAAAATATTTGACGGTGAAGCAGCCTCATT
ATTGCGGCAAGATTGATATCTACATTGAGGATATTCGTCAAAACATTGAAGCCGACATTCTAAAACTGCCAGAAGGCTCC
GGCTTAGATGTGATGTACATCTTTAATGTCGGTGGTGGAGCTAACGCCGCGCGTATTCATAACCTAGAAACTGCGGTAGA
AGTACTCTCAAGTTATGCATTCGATGGTGATAGAGACCAGTTGCAGAAACTCAAAGAGCTTGGTGGAGAGTTTACTCGTT
TGGCTGATAAGGCTTTGGGCAACAAAAAAGATAAGCAAGATTTGATGCGTGAAGTGTTGGTCGATGCCATGACGCATGCA
TTAGACTATTGGGAGTCTGTTACGGGTGAAAGTAAATTTGCGTTTGCCGAACAAAGTGGACTGTGGCGCGTCTACCTCGA
CCGAAGCACACTGCAAACCCGCACGCTCGATAAATACATGCGTATCGAAACTCTGCCTAAAACACCACGCTGGAGAACGG
TTCTGAGTTCGATTGAGTTTATTCTTGAACACTGTAAAGAACAGAGCCCTGAACGTGCTTACATCGAAGCACAGCGCGAT
AAATTGCAAAGACTGCTCACTAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.882	100	0.77