Detailed information NTG0407680

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY39_RS03900
• Genome accession: NZ_CP046783
• Coordinates: 818102..819523 (-)
• Length: 473 a.a.
• NCBI ID: WP_021449193.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2013V-1181
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 813102..824523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY39_RS03875	-	813666..814316 (+)	651	WP_020840479.1	thiopurine S-methyltransferase	-
GPY39_RS03880	purT	814418..815593 (-)	1176	WP_021449196.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
GPY39_RS03885	cdd	815741..816628 (-)	888	WP_021449195.1	cytidine deaminase	-
GPY39_RS03890	-	816993..817670 (-)	678	WP_005454891.1	LrgB family protein	-
GPY39_RS03895	-	817672..818046 (-)	375	WP_031776490.1	CidA/LrgA family protein	-
GPY39_RS03900	sbcB	818102..819523 (-)	1422	WP_021449193.1	exodeoxyribonuclease I	Machinery gene
GPY39_RS03905	-	819679..821052 (-)	1374	WP_021449192.1	L-cystine transporter	-
GPY39_RS03910	-	821245..821940 (-)	696	WP_020903895.1	NAD(P)H-binding protein	-
GPY39_RS03915	cobT	822624..823667 (+)	1044	WP_021449191.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY39_RS03920	-	823712..824464 (+)	753	WP_031776489.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54645.97 Da
• Isoelectric Point: 4.9813

>NTDB_id=407680 GPY39_RS03900 WP_021449193.1 818102..819523(-) (sbcB) [Vibrio parahaemolyticus strain 2013V-1181]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=407680 GPY39_RS03900 WP_021449193.1 818102..819523(-) (sbcB) [Vibrio parahaemolyticus strain 2013V-1181]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTACCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAGGGTCTATCCGAGCCT
GAGTTTATTGCTAAGATTCACGCCGAGTTATCGAAGCCAAAAACCACCAGCCTAGGCTATAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGACCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.915	100	0.799