Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SSUD9_RS03155 Genome accession   NC_017620
Coordinates   620086..620889 (+) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 615086..625889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS03130 (SSUD9_0626) - 615515..616213 (-) 699 WP_002935835.1 amino acid ABC transporter permease -
  SSUD9_RS03135 (SSUD9_0627) - 616228..617067 (-) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  SSUD9_RS03140 (SSUD9_0628) - 617078..617839 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  SSUD9_RS03145 (SSUD9_0629) yycF 618033..618737 (+) 705 WP_002935840.1 response regulator YycF -
  SSUD9_RS03150 (SSUD9_0630) micB 618730..620079 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SSUD9_RS03155 (SSUD9_0631) vicX 620086..620889 (+) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  SSUD9_RS03160 (SSUD9_0633) - 621513..622715 (-) 1203 WP_014636845.1 IS110 family transposase -
  SSUD9_RS03165 (SSUD9_0634) - 622954..623409 (+) 456 WP_002935846.1 ATP-binding cassette domain-containing protein -
  SSUD9_RS03170 (SSUD9_0635) pbp2b 623501..625576 (+) 2076 WP_002935847.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=40768 SSUD9_RS03155 WP_002935843.1 620086..620889(+) (vicX) [Streptococcus suis D9]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=40768 SSUD9_RS03155 WP_002935843.1 620086..620889(+) (vicX) [Streptococcus suis D9]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTTGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGTCATCTTTGTAATGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTATCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772