Detailed information NTG0407659

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY17_RS22190
• Genome accession: NZ_CP046782
• Coordinates: 2789176..2790165 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 2013V-1244
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2784176..2795165

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY17_RS22175	recA	2784725..2785768 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
GPY17_RS22180	pncC	2785969..2786451 (-)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
GPY17_RS22185	mutS	2786536..2789097 (+)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
GPY17_RS22190	rpoS	2789176..2790165 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY17_RS22195	-	2790246..2791169 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY17_RS22200	-	2791184..2791810 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY17_RS22205	surE	2791810..2792586 (-)	777	WP_025536693.1	5'/3'-nucleotidase SurE	-
GPY17_RS22210	truD	2792586..2793629 (-)	1044	WP_025552420.1	tRNA pseudouridine(13) synthase TruD	-
GPY17_RS22215	ispF	2793676..2794152 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY17_RS22220	ispD	2794170..2794874 (-)	705	WP_020841271.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY17_RS22225	ftsB	2794876..2795157 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=407659 GPY17_RS22190 WP_005478537.1 2789176..2790165(-) (rpoS) [Vibrio parahaemolyticus strain 2013V-1244]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=407659 GPY17_RS22190 WP_005478537.1 2789176..2790165(-) (rpoS) [Vibrio parahaemolyticus strain 2013V-1244]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCCAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851