Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY17_RS22060 Genome accession   NZ_CP046782
Coordinates   2767062..2767580 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 2013V-1244     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2762062..2772580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY17_RS22035 rimM 2762171..2762719 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  GPY17_RS22040 rpsP 2762748..2762996 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY17_RS22045 ffh 2763206..2764588 (-) 1383 WP_005462555.1 signal recognition particle protein -
  GPY17_RS22050 - 2764801..2765595 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  GPY17_RS22055 - 2765721..2767001 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  GPY17_RS22060 luxS 2767062..2767580 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  GPY17_RS22065 - 2767647..2768252 (-) 606 WP_015297256.1 hypothetical protein -
  GPY17_RS22070 gshA 2768277..2769845 (-) 1569 WP_015297257.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=407656 GPY17_RS22060 WP_005462534.1 2767062..2767580(-) (luxS) [Vibrio parahaemolyticus strain 2013V-1244]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407656 GPY17_RS22060 WP_005462534.1 2767062..2767580(-) (luxS) [Vibrio parahaemolyticus strain 2013V-1244]
ATGCCTTTACTCGATAGCTTCACAGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTCGCTTC
TATGGAAGATGTGCTCAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment