Detailed information NTG0407647

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY17_RS15860
• Genome accession: NZ_CP046782
• Coordinates: 1471152..1472573 (-)
• Length: 473 a.a.
• NCBI ID: WP_021449193.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2013V-1244
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1466152..1477573

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY17_RS15835	-	1466716..1467366 (+)	651	WP_021822365.1	thiopurine S-methyltransferase	-
GPY17_RS15840	purT	1467468..1468643 (-)	1176	WP_005495504.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
GPY17_RS15845	cdd	1468791..1469678 (-)	888	WP_031851444.1	cytidine deaminase	-
GPY17_RS15850	-	1470043..1470720 (-)	678	WP_029795142.1	LrgB family protein	-
GPY17_RS15855	-	1470722..1471096 (-)	375	WP_005455074.1	CidA/LrgA family protein	-
GPY17_RS15860	sbcB	1471152..1472573 (-)	1422	WP_021449193.1	exodeoxyribonuclease I	Machinery gene
GPY17_RS15865	-	1472729..1474102 (-)	1374	WP_031851443.1	L-cystine transporter	-
GPY17_RS15870	-	1474295..1474990 (-)	696	WP_017448627.1	NAD(P)H-binding protein	-
GPY17_RS15875	cobT	1475674..1476717 (+)	1044	WP_021453099.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY17_RS15880	-	1476762..1477514 (+)	753	WP_031776489.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54645.97 Da
• Isoelectric Point: 4.9813

>NTDB_id=407647 GPY17_RS15860 WP_021449193.1 1471152..1472573(-) (sbcB) [Vibrio parahaemolyticus strain 2013V-1244]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=407647 GPY17_RS15860 WP_021449193.1 1471152..1472573(-) (sbcB) [Vibrio parahaemolyticus strain 2013V-1244]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCAATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGAGAATGCCAATAC
ACCAGCTGGATTGTACCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.915	100	0.799