Detailed information NTG0407637

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GPY17_RS10505
• Genome accession: NZ_CP046782
• Coordinates: 367771..368817 (-)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2013V-1244
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 362771..373817

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY17_RS10470	-	362949..363380 (-)	432	WP_089183680.1	DUF2787 family protein	-
GPY17_RS10475	radC	363377..363850 (-)	474	WP_005489555.1	DNA repair protein RadC	-
GPY17_RS10480	-	364021..364170 (+)	150	WP_005489496.1	AlpA family phage regulatory protein	-
GPY17_RS10485	-	364330..364554 (+)	225	WP_020904301.1	hypothetical protein	-
GPY17_RS10490	hslU	364979..366310 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GPY17_RS10495	hslV	366334..366885 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GPY17_RS10500	ftsN	367049..367594 (-)	546	WP_005489623.1	cell division protein FtsN	-
GPY17_RS10505	cytR	367771..368817 (-)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
GPY17_RS10510	priA	369111..371315 (-)	2205	WP_029805229.1	primosomal protein N'	-
GPY17_RS10520	rpmE	371610..371831 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
GPY17_RS10525	rpsJ	372289..372600 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
GPY17_RS10530	rplC	372615..373244 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=407637 GPY17_RS10505 WP_254894148.1 367771..368817(-) (cytR) [Vibrio parahaemolyticus strain 2013V-1244]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=407637 GPY17_RS10505 WP_254894148.1 367771..368817(-) (cytR) [Vibrio parahaemolyticus strain 2013V-1244]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCT
TGGCCATAAACGCATAGCACAAATTTCAGGACCAGATACAGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCTGTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871