Detailed information NTG0407619

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY25_RS16410
• Genome accession: NZ_CP046779
• Coordinates: 3281117..3282106 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 2014V-1066
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3276117..3287106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY25_RS16395	recA	3276665..3277708 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
GPY25_RS16400	pncC	3277909..3278391 (-)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
GPY25_RS16405	mutS	3278476..3281037 (+)	2562	WP_005493944.1	DNA mismatch repair protein MutS	-
GPY25_RS16410	rpoS	3281117..3282106 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY25_RS16415	-	3282187..3283110 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY25_RS16420	-	3283125..3283751 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY25_RS16425	surE	3283751..3284527 (-)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
GPY25_RS16430	truD	3284527..3285570 (-)	1044	WP_005493940.1	tRNA pseudouridine(13) synthase TruD	-
GPY25_RS16435	ispF	3285617..3286093 (-)	477	WP_005493937.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY25_RS16440	ispD	3286111..3286815 (-)	705	WP_005493934.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY25_RS16445	ftsB	3286817..3287098 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=407619 GPY25_RS16410 WP_005478537.1 3281117..3282106(-) (rpoS) [Vibrio parahaemolyticus strain 2014V-1066]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=407619 GPY25_RS16410 WP_005478537.1 3281117..3282106(-) (rpoS) [Vibrio parahaemolyticus strain 2014V-1066]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGTAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACACTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851