Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY25_RS16280 Genome accession   NZ_CP046779
Coordinates   3259002..3259520 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 2014V-1066     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3254002..3264520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY25_RS16255 rimM 3254110..3254658 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  GPY25_RS16260 rpsP 3254687..3254935 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY25_RS16265 ffh 3255145..3256527 (-) 1383 WP_005462555.1 signal recognition particle protein -
  GPY25_RS16270 - 3256740..3257534 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  GPY25_RS16275 - 3257660..3258940 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  GPY25_RS16280 luxS 3259002..3259520 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  GPY25_RS16285 - 3259587..3260192 (-) 606 WP_015297256.1 hypothetical protein -
  GPY25_RS16290 gshA 3260217..3261785 (-) 1569 WP_005493959.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=407616 GPY25_RS16280 WP_005462534.1 3259002..3259520(-) (luxS) [Vibrio parahaemolyticus strain 2014V-1066]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407616 GPY25_RS16280 WP_005462534.1 3259002..3259520(-) (luxS) [Vibrio parahaemolyticus strain 2014V-1066]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment