Detailed information NTG0407608

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY25_RS09550
• Genome accession: NZ_CP046779
• Coordinates: 1914097..1915518 (-)
• Length: 473 a.a.
• NCBI ID: WP_005495501.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2014V-1066
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1909097..1920518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY25_RS09525	-	1909661..1910311 (+)	651	WP_005495505.1	thiopurine S-methyltransferase	-
GPY25_RS09530	purT	1910413..1911588 (-)	1176	WP_005495504.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
GPY25_RS09535	cdd	1911736..1912623 (-)	888	WP_005495503.1	cytidine deaminase	-
GPY25_RS09540	-	1912988..1913665 (-)	678	WP_005495502.1	LrgB family protein	-
GPY25_RS09545	-	1913667..1914041 (-)	375	WP_005455074.1	CidA/LrgA family protein	-
GPY25_RS09550	sbcB	1914097..1915518 (-)	1422	WP_005495501.1	exodeoxyribonuclease I	Machinery gene
GPY25_RS09555	-	1915674..1917047 (-)	1374	WP_005495500.1	L-cystine transporter	-
GPY25_RS09560	-	1917240..1917935 (-)	696	WP_005495499.1	NAD(P)H-binding protein	-
GPY25_RS09565	cobT	1918618..1919661 (+)	1044	WP_005495498.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY25_RS09570	-	1919706..1920458 (+)	753	WP_031777310.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54620.96 Da
• Isoelectric Point: 4.9244

>NTDB_id=407608 GPY25_RS09550 WP_005495501.1 1914097..1915518(-) (sbcB) [Vibrio parahaemolyticus strain 2014V-1066]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIQAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGIEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=407608 GPY25_RS09550 WP_005495501.1 1914097..1915518(-) (sbcB) [Vibrio parahaemolyticus strain 2014V-1066]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTACCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCAAGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCATAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCTAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.915	100	0.799