Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MS8324_RS02555 Genome accession   NZ_CP058917
Coordinates   540728..541333 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MS8324     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 535728..546333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS8324_RS02525 (MS8324_0489) rsmS 536433..536594 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  MS8324_RS02530 (MS8324_0490) priC 536608..537135 (-) 528 WP_000844854.1 primosomal replication protein N'' -
  MS8324_RS02535 (MS8324_0491) ybaN 537205..537582 (+) 378 WP_001188900.1 DUF454 family protein -
  MS8324_RS02540 (MS8324_0492) apt 537735..538286 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  MS8324_RS02545 (MS8324_0493) dnaX 538415..540346 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  MS8324_RS02550 (MS8324_0494) ybaB 540399..540728 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  MS8324_RS02555 (MS8324_0495) recR 540728..541333 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  MS8324_RS02560 (MS8324_0496) htpG 541443..543317 (+) 1875 WP_000678189.1 molecular chaperone HtpG -
  MS8324_RS02565 (MS8324_0497) adk 543498..544142 (+) 645 WP_001313630.1 adenylate kinase -
  MS8324_RS02570 (MS8324_0498) hemH 544274..545236 (+) 963 WP_001250114.1 ferrochelatase -
  MS8324_RS02575 (MS8324_0499) aes 545211..546179 (-) 969 WP_000801820.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=407606 MS8324_RS02555 WP_001195025.1 540728..541333(+) (recR) [Escherichia coli strain MS8324]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=407606 MS8324_RS02555 WP_001195025.1 540728..541333(+) (recR) [Escherichia coli strain MS8324]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443