Detailed information NTG0407598

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GPY25_RS04360
• Genome accession: NZ_CP046779
• Coordinates: 847858..848904 (-)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2014V-1066
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 842858..853904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY25_RS04330	zapB	843029..843271 (+)	243	WP_005481417.1	cell division protein ZapB	-
GPY25_RS04335	rraA	843376..843888 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
GPY25_RS04340	-	843965..844882 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GPY25_RS04345	hslU	845067..846398 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GPY25_RS04350	hslV	846422..846973 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GPY25_RS04355	ftsN	847137..847682 (-)	546	WP_005496929.1	cell division protein FtsN	-
GPY25_RS04360	cytR	847858..848904 (-)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
GPY25_RS04365	priA	849198..851402 (-)	2205	WP_005496931.1	primosomal protein N'	-
GPY25_RS04375	rpmE	851697..851918 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
GPY25_RS04380	rpsJ	852376..852687 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
GPY25_RS04385	rplC	852702..853331 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=407598 GPY25_RS04360 WP_254894148.1 847858..848904(-) (cytR) [Vibrio parahaemolyticus strain 2014V-1066]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=407598 GPY25_RS04360 WP_254894148.1 847858..848904(-) (cytR) [Vibrio parahaemolyticus strain 2014V-1066]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCAGCTATGGAACATGGCTACCTCGTACTACT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTG
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871