Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY34_RS20110 Genome accession   NZ_CP046778
Coordinates   2300218..2300736 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 2014V-1125     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2295218..2305736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY34_RS20100 gshA 2297953..2299521 (+) 1569 WP_005493959.1 glutamate--cysteine ligase -
  GPY34_RS20105 - 2299546..2300151 (+) 606 WP_015297256.1 hypothetical protein -
  GPY34_RS20110 luxS 2300218..2300736 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  GPY34_RS20115 - 2300798..2302078 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  GPY34_RS20120 - 2302204..2302998 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  GPY34_RS20125 ffh 2303211..2304593 (+) 1383 WP_005462555.1 signal recognition particle protein -
  GPY34_RS20130 rpsP 2304803..2305051 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY34_RS20135 rimM 2305080..2305628 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=407572 GPY34_RS20110 WP_005462534.1 2300218..2300736(+) (luxS) [Vibrio parahaemolyticus strain 2014V-1125]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407572 GPY34_RS20110 WP_005462534.1 2300218..2300736(+) (luxS) [Vibrio parahaemolyticus strain 2014V-1125]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment