Detailed information NTG0407550

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GPY34_RS15395
• Genome accession: NZ_CP046778
• Coordinates: 1387112..1388119 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 2014V-1125
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1382112..1393119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY34_RS15370	rplC	1382646..1383275 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
GPY34_RS15375	rpsJ	1383290..1383601 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
GPY34_RS15380	rpmE	1384059..1384280 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
GPY34_RS15390	priA	1384575..1386779 (+)	2205	WP_005496931.1	primosomal protein N'	-
GPY34_RS15395	cytR	1387112..1388119 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
GPY34_RS15400	ftsN	1388295..1388840 (+)	546	WP_005496929.1	cell division protein FtsN	-
GPY34_RS15405	hslV	1389004..1389555 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GPY34_RS15410	hslU	1389579..1390910 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GPY34_RS15415	-	1391095..1392012 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GPY34_RS15420	rraA	1392089..1392601 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
GPY34_RS15425	zapB	1392706..1392948 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=407550 GPY34_RS15395 WP_005481416.1 1387112..1388119(+) (cytR) [Vibrio parahaemolyticus strain 2014V-1125]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=407550 GPY34_RS15395 WP_005481416.1 1387112..1388119(+) (cytR) [Vibrio parahaemolyticus strain 2014V-1125]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCAGCTATGGAACATGGCTACCTCGTACTACTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTGAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904