Detailed information NTG0407549

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MS10858_RS14435
• Genome accession: NZ_CP058897
• Coordinates: 2909972..2910964 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS10858
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2904972..2915964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MS10858_RS14415 (MS10858_2805)	ygbM	2905603..2906379 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
MS10858_RS14420 (MS10858_2806)	ygbN	2906468..2907832 (+)	1365	WP_000104433.1	GntP family transporter	-
MS10858_RS14425 (MS10858_2807)	-	2907975..2909018 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
MS10858_RS14430 (MS10858_2808)	-	2909243..2909794 (+)	552	WP_001179442.1	flavodoxin family protein	-
MS10858_RS14435 (MS10858_2809)	rpoS	2909972..2910964 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
MS10858_RS14440 (MS10858_2810)	nlpD	2911027..2912121 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
MS10858_RS14445 (MS10858_2811)	pcm	2912306..2912932 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
MS10858_RS14450 (MS10858_2812)	surE	2912926..2913687 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
MS10858_RS14455 (MS10858_2813)	truD	2913668..2914717 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
MS10858_RS14460 (MS10858_2814)	ispF	2914714..2915193 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MS10858_RS14465 (MS10858_2815)	ispD	2915193..2915903 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=407549 MS10858_RS14435 WP_000081550.1 2909972..2910964(-) (rpoS) [Escherichia coli strain MS10858]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=407549 MS10858_RS14435 WP_000081550.1 2909972..2910964(-) (rpoS) [Escherichia coli strain MS10858]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715