Detailed information NTG0407540

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY34_RS10210
• Genome accession: NZ_CP046778
• Coordinates: 320461..321882 (+)
• Length: 473 a.a.
• NCBI ID: WP_005495501.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2014V-1125
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 315461..326882

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY34_RS10190	-	315521..316273 (-)	753	WP_031777310.1	adenosylcobinamide-GDP ribazoletransferase	-
GPY34_RS10195	cobT	316318..317361 (-)	1044	WP_005495498.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY34_RS10200	-	318044..318739 (+)	696	WP_005495499.1	NAD(P)H-binding protein	-
GPY34_RS10205	-	318932..320305 (+)	1374	WP_005495500.1	L-cystine transporter	-
GPY34_RS10210	sbcB	320461..321882 (+)	1422	WP_005495501.1	exodeoxyribonuclease I	Machinery gene
GPY34_RS10215	-	321938..322312 (+)	375	WP_005455074.1	CidA/LrgA family protein	-
GPY34_RS10220	-	322314..322991 (+)	678	WP_005495502.1	LrgB family protein	-
GPY34_RS10225	cdd	323356..324243 (+)	888	WP_005495503.1	cytidine deaminase	-
GPY34_RS10230	purT	324391..325566 (+)	1176	WP_005495504.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
GPY34_RS10235	-	325668..326318 (-)	651	WP_005495505.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54620.96 Da
• Isoelectric Point: 4.9244

>NTDB_id=407540 GPY34_RS10210 WP_005495501.1 320461..321882(+) (sbcB) [Vibrio parahaemolyticus strain 2014V-1125]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIQAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGIEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=407540 GPY34_RS10210 WP_005495501.1 320461..321882(+) (sbcB) [Vibrio parahaemolyticus strain 2014V-1125]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTACCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCAAGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCATAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCTAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.915	100	0.799