Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY34_RS07440 Genome accession   NZ_CP046777
Coordinates   1575187..1576284 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain 2014V-1125     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1570187..1581284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY34_RS07405 - 1570324..1571298 (+) 975 WP_005499317.1 Gfo/Idh/MocA family oxidoreductase -
  GPY34_RS07410 - 1571375..1572712 (-) 1338 WP_021447933.1 MATE family efflux transporter -
  GPY34_RS07415 - 1572835..1573149 (-) 315 WP_005453573.1 DUF496 family protein -
  GPY34_RS07425 - 1573476..1573691 (+) 216 WP_005499315.1 hypothetical protein -
  GPY34_RS07430 - 1573868..1574518 (+) 651 WP_005499314.1 YceH family protein -
  GPY34_RS07435 - 1574515..1574835 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  GPY34_RS07440 luxP 1575187..1576284 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY34_RS07445 luxQ 1576284..1578860 (+) 2577 WP_005499304.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  GPY34_RS07450 slyA 1579072..1579527 (+) 456 WP_005499300.1 transcriptional regulator SlyA -
  GPY34_RS07455 - 1579565..1580620 (+) 1056 WP_005499297.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=407539 GPY34_RS07440 WP_005463467.1 1575187..1576284(+) (luxP) [Vibrio parahaemolyticus strain 2014V-1125]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=407539 GPY34_RS07440 WP_005463467.1 1575187..1576284(+) (luxP) [Vibrio parahaemolyticus strain 2014V-1125]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGAATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTTCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAATATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGCCCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGATAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAGCGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment