Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPY46_RS23590 Genome accession   NZ_CP046776
Coordinates   2987631..2988146 (-) Length   171 a.a.
NCBI ID   WP_025503625.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM43962     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2982631..2993146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY46_RS23575 aroB 2984012..2985112 (-) 1101 WP_005496576.1 3-dehydroquinate synthase -
  GPY46_RS23580 aroK 2985144..2985662 (-) 519 WP_005381319.1 shikimate kinase AroK -
  GPY46_RS23585 pilQ 2985851..2987599 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  GPY46_RS23590 pilP 2987631..2988146 (-) 516 WP_025503625.1 pilus assembly protein PilP Machinery gene
  GPY46_RS23595 pilO 2988136..2988729 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY46_RS23600 pilN 2988722..2989300 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  GPY46_RS23605 pilM 2989284..2990300 (-) 1017 WP_021449761.1 type IV pilus assembly protein PilM Machinery gene
  GPY46_RS23610 - 2990443..2993013 (+) 2571 WP_025503624.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18900.08 Da        Isoelectric Point: 10.5004

>NTDB_id=407529 GPY46_RS23590 WP_025503625.1 2987631..2988146(-) (pilP) [Vibrio parahaemolyticus strain AM43962]
MKNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=407529 GPY46_RS23590 WP_025503625.1 2987631..2988146(-) (pilP) [Vibrio parahaemolyticus strain AM43962]
ATGAAAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

58.721

100

0.591

Multiple sequence alignment