Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY46_RS22255 Genome accession   NZ_CP046776
Coordinates   2732638..2733156 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain AM43962     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2727638..2738156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY46_RS22230 rimM 2727746..2728294 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  GPY46_RS22235 rpsP 2728323..2728571 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY46_RS22240 ffh 2728781..2730163 (-) 1383 WP_005462555.1 signal recognition particle protein -
  GPY46_RS22245 - 2730376..2731170 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  GPY46_RS22250 - 2731296..2732576 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  GPY46_RS22255 luxS 2732638..2733156 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  GPY46_RS22260 - 2733223..2733828 (-) 606 WP_005484861.1 hypothetical protein -
  GPY46_RS22265 gshA 2733853..2735421 (-) 1569 WP_015297257.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=407519 GPY46_RS22255 WP_005462534.1 2732638..2733156(-) (luxS) [Vibrio parahaemolyticus strain AM43962]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407519 GPY46_RS22255 WP_005462534.1 2732638..2733156(-) (luxS) [Vibrio parahaemolyticus strain AM43962]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTCAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment