Detailed information NTG0407500

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GPY46_RS10335
• Genome accession: NZ_CP046776
• Coordinates: 318041..319087 (-)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain AM43962
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 313041..324087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY46_RS10305	zapB	313210..313452 (+)	243	WP_005481417.1	cell division protein ZapB	-
GPY46_RS10310	rraA	313557..314069 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
GPY46_RS10315	-	314146..315063 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GPY46_RS10320	hslU	315248..316579 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GPY46_RS10325	hslV	316603..317154 (-)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
GPY46_RS10330	ftsN	317319..317864 (-)	546	WP_005481405.1	cell division protein FtsN	-
GPY46_RS10335	cytR	318041..319087 (-)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
GPY46_RS10340	priA	319381..321585 (-)	2205	WP_025793658.1	primosomal protein N'	-
GPY46_RS10350	rpmE	321880..322101 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
GPY46_RS10355	rpsJ	322559..322870 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
GPY46_RS10360	rplC	322885..323514 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=407500 GPY46_RS10335 WP_254894148.1 318041..319087(-) (cytR) [Vibrio parahaemolyticus strain AM43962]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=407500 GPY46_RS10335 WP_254894148.1 318041..319087(-) (cytR) [Vibrio parahaemolyticus strain AM43962]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCCAAACGACTCGGTCTGCGCGTTCCGCAAGATTTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871