Detailed information NTG0407477

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY59_RS22300
• Genome accession: NZ_CP046772
• Coordinates: 2896970..2897956 (-)
• Length: 328 a.a.
• NCBI ID: WP_158174158.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain 2014V-1011
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2891970..2902956

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY59_RS22285	recA	2892515..2893558 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
GPY59_RS22290	pncC	2893759..2894241 (-)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
GPY59_RS22295	mutS	2894326..2896887 (+)	2562	WP_033907432.1	DNA mismatch repair protein MutS	-
GPY59_RS22300	rpoS	2896970..2897956 (-)	987	WP_158174158.1	RNA polymerase sigma factor RpoS	Regulator
GPY59_RS22305	-	2898037..2898960 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY59_RS22310	-	2898974..2899600 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY59_RS22315	surE	2899600..2900376 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
GPY59_RS22320	truD	2900376..2901419 (-)	1044	WP_017821624.1	tRNA pseudouridine(13) synthase TruD	-
GPY59_RS22325	ispF	2901465..2901941 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY59_RS22330	ispD	2901956..2902663 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY59_RS22335	ftsB	2902665..2902946 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37398.29 Da
• Isoelectric Point: 4.7268

>NTDB_id=407477 GPY59_RS22300 WP_158174158.1 2896970..2897956(-) (rpoS) [Vibrio alginolyticus strain 2014V-1011]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTDSKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=407477 GPY59_RS22300 WP_158174158.1 2896970..2897956(-) (rpoS) [Vibrio alginolyticus strain 2014V-1011]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGACAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851