Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY59_RS22165 Genome accession   NZ_CP046772
Coordinates   2874804..2875322 (-) Length   172 a.a.
NCBI ID   WP_017820391.1    Uniprot ID   A0A2I3C9Z1
Organism   Vibrio alginolyticus strain 2014V-1011     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2869804..2880322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY59_RS22140 rimM 2869893..2870441 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  GPY59_RS22145 rpsP 2870471..2870719 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY59_RS22150 ffh 2870929..2872311 (-) 1383 WP_158174155.1 signal recognition particle protein -
  GPY59_RS22155 - 2872536..2873330 (+) 795 WP_005379950.1 inner membrane protein YpjD -
  GPY59_RS22160 - 2873455..2874735 (+) 1281 WP_005379948.1 CNNM domain-containing protein -
  GPY59_RS22165 luxS 2874804..2875322 (-) 519 WP_017820391.1 S-ribosylhomocysteine lyase Regulator
  GPY59_RS22170 - 2875407..2876012 (-) 606 WP_169644374.1 hypothetical protein -
  GPY59_RS22175 gshA 2876036..2877604 (-) 1569 WP_158174156.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.83 Da        Isoelectric Point: 4.8443

>NTDB_id=407474 GPY59_RS22165 WP_017820391.1 2874804..2875322(-) (luxS) [Vibrio alginolyticus strain 2014V-1011]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407474 GPY59_RS22165 WP_017820391.1 2874804..2875322(-) (luxS) [Vibrio alginolyticus strain 2014V-1011]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCGGCAGTGCGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGACGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment