Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPY59_RS16340 Genome accession   NZ_CP046772
Coordinates   1725687..1727213 (-) Length   508 a.a.
NCBI ID   WP_158173881.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2014V-1011     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1720687..1732213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY59_RS16320 - 1720706..1722136 (-) 1431 WP_017820656.1 lipopolysaccharide biosynthesis protein -
  GPY59_RS16325 - 1722129..1723301 (-) 1173 WP_017634933.1 glycosyltransferase -
  GPY59_RS16330 - 1723313..1724497 (-) 1185 WP_158173880.1 glycosyltransferase -
  GPY59_RS16335 - 1724642..1725712 (-) 1071 WP_053303084.1 glycosyltransferase family 4 protein -
  GPY59_RS16340 luxO 1725687..1727213 (-) 1527 WP_158173881.1 sigma-54 dependent transcriptional regulator Regulator
  GPY59_RS16345 - 1727522..1727902 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  GPY59_RS16350 - 1727914..1728600 (-) 687 WP_054576898.1 AAA family ATPase -
  GPY59_RS16355 - 1728600..1730702 (-) 2103 WP_054574139.1 SLBB domain-containing protein -
  GPY59_RS16360 - 1730699..1731565 (-) 867 WP_017634930.1 OmpA family protein -
  GPY59_RS16365 - 1731592..1731912 (-) 321 WP_017634929.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56596.43 Da        Isoelectric Point: 5.7914

>NTDB_id=407466 GPY59_RS16340 WP_158173881.1 1725687..1727213(-) (luxO) [Vibrio alginolyticus strain 2014V-1011]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKYFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVNHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPGYTEEPSPSAVEPSITAAEQPGTPSSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=407466 GPY59_RS16340 WP_158173881.1 1725687..1727213(-) (luxO) [Vibrio alginolyticus strain 2014V-1011]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGACGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACATCAGTCGCATTGCACCTCAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGCACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTAGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATT
GTCACGCTTGCCAAGTACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAACCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGGTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCAGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATTGCGTACTGTGATGGCAACGTTCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50.101

97.047

0.486

Multiple sequence alignment