Detailed information NTG0407465

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY59_RS15420
• Genome accession: NZ_CP046772
• Coordinates: 1507569..1508990 (-)
• Length: 473 a.a.
• NCBI ID: WP_158173823.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain 2014V-1011
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1502569..1513990

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY59_RS15395	-	1503100..1503750 (+)	651	WP_021707633.1	thiopurine S-methyltransferase	-
GPY59_RS15400	purT	1503823..1504998 (-)	1176	WP_017633939.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
GPY59_RS15405	cdd	1505142..1506029 (-)	888	WP_005385457.1	cytidine deaminase	-
GPY59_RS15410	-	1506460..1507137 (-)	678	WP_005385454.1	LrgB family protein	-
GPY59_RS15415	-	1507139..1507513 (-)	375	WP_005385452.1	CidA/LrgA family protein	-
GPY59_RS15420	sbcB	1507569..1508990 (-)	1422	WP_158173823.1	exodeoxyribonuclease I	Machinery gene
GPY59_RS15425	-	1509148..1510521 (-)	1374	WP_047100707.1	L-cystine transporter	-
GPY59_RS15430	-	1510722..1511411 (-)	690	WP_047100706.1	NAD(P)H-binding protein	-
GPY59_RS15435	cobT	1511660..1512703 (+)	1044	WP_104979038.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY59_RS15440	-	1512733..1513509 (+)	777	WP_158174227.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54460.65 Da
• Isoelectric Point: 4.8633

>NTDB_id=407465 GPY59_RS15420 WP_158173823.1 1507569..1508990(-) (sbcB) [Vibrio alginolyticus strain 2014V-1011]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=407465 GPY59_RS15420 WP_158173823.1 1507569..1508990(-) (sbcB) [Vibrio alginolyticus strain 2014V-1011]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACGAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAACAATGTCTCGCCAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCCGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.493	100	0.795