Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY59_RS07725 Genome accession   NZ_CP046771
Coordinates   1710411..1711592 (-) Length   393 a.a.
NCBI ID   WP_158173468.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2014V-1011     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1705411..1716592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY59_RS07710 - 1706643..1707191 (+) 549 WP_104980607.1 GNAT family N-acetyltransferase -
  GPY59_RS07715 - 1707281..1707898 (-) 618 WP_158173466.1 HAD family phosphatase -
  GPY59_RS07720 cqsS 1708262..1710307 (+) 2046 WP_158173467.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY59_RS07725 cqsA 1710411..1711592 (-) 1182 WP_158173468.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY59_RS07730 ylqF 1711929..1712873 (-) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43637.88 Da        Isoelectric Point: 6.3840

>NTDB_id=407445 GPY59_RS07725 WP_158173468.1 1710411..1711592(-) (cqsA) [Vibrio alginolyticus strain 2014V-1011]
MSETIQSKPLPSFIEERLDFYIQDLIEPNENKKHLVLGKRPPCNAVVLQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTS
HLRKQISRHGSGIIIVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGILQGLGLTHKVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIRKSDDKRDILFERAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVYGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLTVCQQAFAHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=407445 GPY59_RS07725 WP_158173468.1 1710411..1711592(-) (cqsA) [Vibrio alginolyticus strain 2014V-1011]
ATGAGTGAAACTATACAAAGCAAACCACTTCCCTCCTTTATCGAGGAACGCCTAGATTTTTATATTCAAGATCTAATCGA
ACCGAATGAGAACAAAAAACACCTTGTTCTTGGTAAACGCCCACCGTGTAATGCCGTTGTCCTGCAAAGCAATGATTACC
TTGCACTGTCTCATAATAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCCCAGCACGATGACAACGTCGTGATGTCC
GCGATTTTCTTACAAGACGATGAATCGAAACCTGCATTTGAAACGCAACTAGCCAGTTTCGTTGGTATGCCTAGTTGTCT
ACTTTCTCAATCTGGTTGGGCTGCGAATGTCGGCTTATTGCAGACTATTTGTGCACCGAACATACCTGTGTACATTGATT
TCTTTGCACATATGTCTTTGTGGGAAGGCGCACGTATTGCCGGAGCACAAATTCATCCGTTCATGCATAACAACACCAGT
CACCTAAGAAAGCAGATTTCACGTCACGGTTCAGGGATCATTATTGTGGATTCGGTTTACAGCACTATCGGGACCATCGC
TCCTCTACGTGATATCTACGAAATAGCACAGGAGTTTGACTGCGGCCTGGTTGTAGATGAATCACACTCTTTAGGTACAC
ACGGTCCACAAGGTGCGGGGATACTGCAGGGTCTTGGCTTAACTCATAAGGTAGATTTTATTACCGTTAGTCTTGCCAAG
ACATTTGCTTATCGTGCTGGCGCGATTTTAGGCCCAGAAAAACTGGCGAAGACGCTTCCGTTTGTGGCGTACCCTGCAAT
ATTTAGTTCTACCGTATTACCGCAAGAGATCATTCGGCTAGAGAAAACACTAGACGTCATAAGAAAATCAGATGATAAGC
GAGATATTCTGTTTGAAAGAGCCAAGTCTTTAGCCGTTGGTTTAAAACGCATTGGATTTACTATTCGCAGTGAATCACAA
ATTATCGCATTAGAATGCGGCAACGAGAGAAACACTGAGCGAGTCCGCGACTTTCTCGAAGAGCGAAATGTTTACGGCGC
AGTGTTTTGCCGCCCTGCAACTGGAAGGAACAAAAACATCATCCGTTTTTCAGTCAATGCAGACATGACAGCTGCTGAAG
TTGATCATGTACTCACTGTCTGCCAACAAGCATTTGCACACCCTGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.364

98.473

0.565

Multiple sequence alignment