Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY59_RS06470 Genome accession   NZ_CP046771
Coordinates   1388829..1389926 (+) Length   365 a.a.
NCBI ID   WP_104980502.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2014V-1011     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1383829..1394926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY59_RS06445 - 1385144..1386487 (-) 1344 WP_025767935.1 MATE family efflux transporter -
  GPY59_RS06450 - 1386609..1386923 (-) 315 WP_005373603.1 DUF496 family protein -
  GPY59_RS06455 - 1387165..1387368 (+) 204 WP_031777159.1 hypothetical protein -
  GPY59_RS06460 - 1387534..1388184 (+) 651 WP_005373594.1 YceH family protein -
  GPY59_RS06465 - 1388181..1388498 (+) 318 WP_005373593.1 GIY-YIG nuclease family protein -
  GPY59_RS06470 luxP 1388829..1389926 (+) 1098 WP_104980502.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY59_RS06475 luxQ 1389926..1392502 (+) 2577 WP_017635176.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  GPY59_RS06480 - 1392798..1393253 (+) 456 WP_033906368.1 MarR family transcriptional regulator -
  GPY59_RS06485 - 1393289..1394347 (+) 1059 WP_017635178.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41617.07 Da        Isoelectric Point: 5.9503

>NTDB_id=407443 GPY59_RS06470 WP_104980502.1 1388829..1389926(+) (luxP) [Vibrio alginolyticus strain 2014V-1011]
MKKALVFSLISMAAFTPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=407443 GPY59_RS06470 WP_104980502.1 1388829..1389926(+) (luxP) [Vibrio alginolyticus strain 2014V-1011]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTACGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAATTTTTAGACCAGTTTCCACAACAGAAGCAGCTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAAAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGATGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAACTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTATTTCTCGGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAACCAGTTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGATTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGACGATGTAATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACTGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACCGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment