Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY10_RS18075 Genome accession   NZ_CP046768
Coordinates   703301..704398 (-) Length   365 a.a.
NCBI ID   WP_024375537.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2013V-1300     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 698301..709398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY10_RS18055 - 698840..699214 (+) 375 WP_020433707.1 YgiW/YdeI family stress tolerance OB fold protein -
  GPY10_RS18060 - 699367..699891 (+) 525 WP_047457974.1 hypothetical protein -
  GPY10_RS18065 - 700026..700706 (+) 681 WP_100267640.1 flagellar brake protein -
  GPY10_RS18070 luxQ 700712..703279 (-) 2568 WP_055453537.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPY10_RS18075 luxP 703301..704398 (-) 1098 WP_024375537.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY10_RS18080 traF 704609..705765 (-) 1157 Protein_671 conjugal transfer protein TraF -
  GPY10_RS18085 - 705879..706160 (-) 282 WP_158152199.1 GIY-YIG nuclease family protein -
  GPY10_RS18090 - 706171..706806 (-) 636 WP_020433719.1 YceH family protein -
  GPY10_RS18095 - 706851..707048 (-) 198 WP_020329288.1 hypothetical protein -
  GPY10_RS18100 - 707238..707555 (+) 318 WP_020329287.1 DUF496 family protein -
  GPY10_RS18105 - 707677..707859 (-) 183 WP_158152200.1 hypothetical protein -
  GPY10_RS18110 - 707991..708647 (+) 657 WP_158152201.1 hypothetical protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41555.79 Da        Isoelectric Point: 5.0163

>NTDB_id=407438 GPY10_RS18075 WP_024375537.1 703301..704398(-) (luxP) [Vibrio fluvialis strain 2013V-1300]
MKKTLLLIVCLCFAPLAFAYSSQVLNGYWHYQEFLNANPQQKTLTESLSNAVRQSPARLNVKQSKPVTISVVYPGQQISD
YWIRNIKAFEMRLEELGIEYQINQVFTRPNLDMRQQSLSLMEALKNNTDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDSRQPMMYVGFDHETGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMEGTGDYQLASSYYTKAT
QESGYEATLNILKNDPDIKFIYACSTDVALGAAQALQEQNREDIQVNGWGGGSAELEALNEGHLDVTVMRINDDTGIAMA
EAIKRDLEGEAVPVVYSGDFEIVTKEDSSQKIDVFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=407438 GPY10_RS18075 WP_024375537.1 703301..704398(-) (luxP) [Vibrio fluvialis strain 2013V-1300]
ATGAAAAAAACACTACTACTTATAGTTTGCCTCTGTTTTGCTCCTTTAGCCTTTGCGTATTCGTCTCAAGTACTGAATGG
TTACTGGCATTATCAAGAGTTTCTGAATGCAAATCCGCAACAGAAGACGTTGACGGAGTCGCTTTCTAATGCGGTCAGAC
AATCGCCGGCAAGGCTGAATGTCAAACAAAGCAAGCCTGTGACCATTTCGGTCGTCTATCCGGGGCAGCAGATTTCAGAT
TACTGGATTCGCAACATTAAGGCGTTTGAGATGCGTCTGGAAGAGCTGGGGATTGAGTACCAAATCAATCAGGTTTTTAC
GCGGCCTAATCTGGATATGCGTCAGCAAAGCCTTTCTTTGATGGAAGCACTGAAAAACAACACCGATTATCTGATCTTTA
CTCTCGACACTACGCGTCACCGCAAGTTTATCGAACATGTTCTCAGCTCTTCTCCAACCAAATTGATTCTTCAGAATATC
ACTACTCCGGTCAGAGACTGGGATAGCCGTCAGCCGATGATGTATGTGGGCTTTGACCACGAAACCGGCGCGCAGCAACT
GGCGCAGTATTATCGCGAACACGTGCCTAAAGGCAGCAAATATTCCGTGCTGTATTTCTCTGAAGGCTACGTCAGCGACG
CACGTGGCGACACTTTTATTCAGCAGATGGAAGGCACTGGTGATTATCAGCTGGCCTCTTCTTACTACACCAAAGCTACT
CAGGAGAGTGGTTACGAAGCAACGCTTAACATTCTGAAAAACGATCCGGACATCAAATTTATTTATGCCTGTTCAACGGA
CGTGGCACTGGGTGCTGCGCAAGCGTTGCAAGAGCAGAATCGTGAAGACATTCAGGTCAACGGTTGGGGCGGTGGCTCGG
CAGAGCTTGAAGCACTGAATGAAGGGCATCTGGATGTGACCGTGATGCGCATCAACGACGATACGGGCATTGCAATGGCG
GAAGCCATCAAACGCGACCTTGAAGGCGAGGCGGTGCCAGTGGTCTATTCCGGCGACTTTGAGATTGTCACCAAAGAAGA
TAGTTCGCAAAAAATCGATGTATTTAAGCAACGAGCATTTCGTTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.685

100

0.707

Multiple sequence alignment