Detailed information NTG0407433

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPY10_RS12620
• Genome accession: NZ_CP046767
• Coordinates: 2694474..2697863 (-)
• Length: 1129 a.a.
• NCBI ID: WP_158151743.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain 2013V-1300
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2689474..2702863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY10_RS12605	-	2689936..2690961 (-)	1026	WP_020332022.1	ABC transporter permease	-
GPY10_RS12610	-	2690964..2691950 (-)	987	WP_044363926.1	ABC transporter permease	-
GPY10_RS12615	-	2692116..2693786 (-)	1671	WP_020332024.1	ABC transporter substrate-binding protein	-
GPY10_RS12620	chiS	2694474..2697863 (-)	3390	WP_158151743.1	response regulator	Regulator
GPY10_RS12625	rsmC	2698068..2699090 (-)	1023	WP_158147143.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPY10_RS12630	-	2699175..2700260 (-)	1086	WP_024373684.1	AI-2E family transporter	-
GPY10_RS12635	-	2700297..2700455 (+)	159	WP_158151744.1	hypothetical protein	-
GPY10_RS12640	hemL	2700525..2701817 (-)	1293	WP_020332029.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPY10_RS12645	erpA	2702126..2702467 (+)	342	WP_020332030.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127888.53 Da
• Isoelectric Point: 6.5463

>NTDB_id=407433 GPY10_RS12620 WP_158151743.1 2694474..2697863(-) (chiS) [Vibrio fluvialis strain 2013V-1300]
MFRFNRKQKFKRLQNTLMLAFLVLSITPLTVTAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQVIDYLTAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGVDIDQAREHAQQRYVPGSGDQIKTSVLPESSSYVGSERYRLLHKRYHWAYMELLKRSDF
DDILLVDINGNVVYSIFKNANYGTNLLTGKFKDSNLGQTFRQLEKQVSEHRKTNEDYTPVVLSDFVDENGRQYAWMGAPI
IQQGYLHSYAMFRLPNNGITKLIADTNRTSSMRTLLVGQDHRSRTLAYEQPEIDKSTQVIDWALNGSRSVGTYTNQAGEK
TIAAYAPINLKDLHWALVVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDE
TMINTDRRDEIGRLAVSFERMQRSIREKMQLIKAQNKELESNIQVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIG
IAEALISGANGPINAAHKYQLDIIISSGQRLATLVDDLLDYHKMRYGNLDINRTAVNLSNATRLVLELSNHLLGKKPIRI
INQVAENPAWVSADAQRLEQVLYNLIGNAIKYTSEGKIVISANQVDNHIRVQVVDTGQGIPAEQLEHIFEPLIQAGHDTS
RYRQGAGLGLSISRQLIELMHGSLYVSSQPMVGTTFSFTLPIASEQEIAAAQLTQLPHFQAPEFTELDLPENHSIPENPN
GPLLLVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLKAVAEEKPELLLLDIMMPGMSGYQVCEELRKTYDHAQLPVIM
LTALNQTDDRVRGFEAGANDYLSKPFNKQELAARIIAHLTASKAEQRRIENAELQKELKHRAMVEASLLETQGRLLEQLE
SAPEAIVCIREDHKIRFANEAASRLFKRSQEQIKRSNADELIAPKYLLVEQEHYCGNVDIFVDDIRQHVNADVLRLPEGA
GLQAMYIFNVGGSINAARIHNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKASGDSQSKQDLMRAVLVDAMTSA
LNYWEKVSGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILDHCQEQGPERTYIEVQRD
KLQKLLTSE

Nucleotide

• Length: 3390 bp

>NTDB_id=407433 GPY10_RS12620 WP_158151743.1 2694474..2697863(-) (chiS) [Vibrio fluvialis strain 2013V-1300]
ATGTTTAGGTTCAATCGGAAGCAAAAGTTTAAGCGCCTGCAGAATACTCTTATGCTGGCGTTCCTGGTTCTCAGCATCAC
CCCTCTGACGGTGACGGCAATCTTTTTCCTTCAATCTCACAGTAAAGACTTGCAGGAACAAAGCACATCGCACCTTCTGT
CAGTGCGGGATACCAAACAGCAGCAAGTAATCGACTACCTCACGGCTAAAGAGTCTGAAGTGATGGGCTTTGTCCGCTCA
GAACTTGCTTACGCAAGTGGAGGTCGCTTCTATGGATTGGTCAACGCATTTCAGCGCTTGGGAGTCGATATCGATCAGGC
GCGCGAGCATGCGCAGCAACGTTATGTACCGGGCTCCGGCGACCAAATCAAAACCTCCGTGTTACCAGAGTCGAGCAGTT
ACGTCGGCAGCGAACGCTATCGCTTGTTGCATAAACGCTACCACTGGGCGTATATGGAACTGCTTAAGCGTTCCGATTTT
GACGATATTCTGTTGGTCGATATCAACGGAAACGTGGTGTATTCCATTTTTAAAAATGCCAACTACGGCACCAACCTGCT
GACGGGCAAATTTAAAGACAGTAATCTGGGTCAAACCTTCCGCCAACTAGAAAAGCAGGTTAGCGAACACCGTAAAACCA
ATGAAGATTACACCCCTGTCGTACTGTCTGATTTTGTTGATGAAAATGGCCGTCAATATGCGTGGATGGGTGCACCAATC
ATTCAGCAAGGCTACTTGCACAGTTATGCGATGTTCCGCCTGCCCAATAATGGCATTACCAAGCTGATTGCAGATACTAA
CAGAACCTCTTCAATGCGCACTCTGTTGGTCGGCCAGGATCATCGCTCGCGTACCCTCGCTTACGAGCAACCAGAGATCG
ATAAGAGTACTCAAGTGATTGATTGGGCGCTGAACGGCAGTCGTTCTGTTGGCACTTATACTAATCAGGCCGGGGAAAAA
ACCATCGCCGCCTACGCCCCTATCAACCTCAAAGATTTGCATTGGGCACTGGTGGTTGAACTACCAGAAAAAGAGGCCTT
TGCGCGCGTCCGTCAGTTGGAGAAGCTGTTCATCTTCGCCATGCTGACCGCAATTATTTTGGTGGTGATCGCCTCACATT
ATCTGTCTAACTTCATTACATCTCCGCTCCTTAAACTGACCTGGGCAGCGGAGCGTGTCTCCGCTGGCGACTTGGATGAA
ACCATGATCAACACCGATCGGCGTGATGAAATTGGTCGGTTGGCGGTGAGTTTTGAACGTATGCAACGCTCTATTCGCGA
GAAGATGCAACTGATTAAGGCGCAGAATAAAGAGTTGGAAAGCAATATTCAGGTCATTCGTAAACAGAACGATGAATTGC
AGTTGGCCAACAAACTGAAAGATGAGTTTCTCGCCACAACTTCGCATGAACTCAGAACGCCTTTACATGGCATGATCGGT
ATTGCCGAGGCGCTGATTTCCGGCGCCAATGGTCCAATTAATGCGGCACACAAGTATCAGCTCGACATTATCATCAGTAG
CGGTCAACGACTGGCCACTTTGGTGGATGACTTGCTCGACTACCACAAAATGCGCTACGGCAATCTCGACATCAACAGGA
CTGCGGTTAATCTGTCCAATGCCACGCGTTTGGTGCTGGAACTGTCTAATCATCTGTTGGGCAAAAAGCCAATCCGCATT
ATTAACCAAGTCGCCGAAAATCCGGCGTGGGTATCTGCCGATGCCCAGCGTTTGGAACAGGTGTTGTATAACCTGATCGG
CAACGCCATCAAATACACCTCGGAAGGTAAGATTGTCATCTCAGCCAATCAAGTCGATAACCATATTCGCGTTCAGGTCG
TGGATACCGGGCAAGGTATTCCGGCCGAACAGCTGGAACACATTTTTGAACCTCTGATTCAAGCCGGACATGACACTAGC
CGCTATCGTCAGGGGGCAGGACTGGGACTCTCCATCAGCCGTCAGTTAATTGAGTTGATGCATGGCTCGCTGTATGTCAG
CAGCCAACCTATGGTTGGCACTACCTTTAGTTTCACCCTGCCAATCGCGTCAGAACAAGAGATTGCTGCCGCACAACTGA
CGCAGCTACCCCATTTCCAGGCTCCTGAATTTACGGAACTGGATCTGCCTGAGAATCATAGCATTCCGGAAAATCCGAAC
GGCCCACTGCTGTTAGTCGCGGATGATGAGCCGGTTAACTTACGTGTTCTGGACAGCTTCCTGCGTTTAGAAGGCTATCG
TGTACGCACCGCACAGGATGGCAATGAAGTGTTGAAAGCTGTGGCTGAAGAGAAACCAGAGCTGCTATTACTCGACATCA
TGATGCCCGGTATGAGCGGTTATCAGGTTTGTGAAGAGCTTCGTAAAACGTATGATCACGCTCAATTACCAGTAATTATG
CTGACCGCTCTGAATCAAACCGACGATCGCGTACGAGGCTTTGAAGCGGGTGCCAACGACTACCTGTCCAAACCTTTCAA
CAAACAGGAACTGGCTGCACGTATTATCGCGCACCTGACAGCAAGCAAAGCAGAACAACGTCGGATTGAAAACGCCGAGT
TGCAGAAAGAATTGAAGCACCGCGCGATGGTTGAGGCCAGTTTGCTGGAAACACAAGGACGTTTGTTGGAACAGCTGGAA
TCGGCACCGGAAGCCATTGTTTGTATTCGTGAAGATCACAAAATCCGCTTTGCCAATGAAGCTGCTTCGCGCCTGTTTAA
ACGCAGTCAGGAGCAAATCAAGCGTTCTAACGCAGATGAGTTGATCGCTCCGAAGTATCTGCTGGTCGAACAGGAACATT
ATTGCGGCAACGTCGATATTTTTGTTGATGATATTCGGCAACACGTCAATGCTGATGTCCTCCGTCTGCCAGAAGGCGCC
GGATTACAGGCAATGTATATCTTTAATGTGGGTGGCAGCATTAACGCTGCGCGTATTCATAACCTTGAAACCGCCGTTGA
AGCCCTGTCGAGCTATGCCTTTGAAGGCGACAAGGATAAGCTGCAGCAACTCAAAGAACTGGGGGGAGAATTTACCCGCC
TGGCGGACAAAGCCTCAGGTGACAGCCAATCTAAGCAGGACTTGATGCGCGCCGTCTTGGTGGATGCGATGACATCAGCC
CTCAACTATTGGGAGAAAGTCTCCGGGCAAAGCAAATTCACGTTCGCAGAACAAAGTGGGTTATGGCGCGTCTATCTGGA
CCGAAGCACGCTGCAGACCCGCACACTCGACAAGTATCTGCGTATCGAAACACTGCCTAAAACACCGCGGTGGCGCACGG
TACTCAATTCGCTGGATTACATTCTCGACCACTGCCAGGAGCAGGGGCCTGAACGTACCTACATTGAAGTACAACGCGAC
AAACTGCAAAAGCTGCTCACCTCTGAATAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (725-835)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	84.765	100	0.848