Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY10_RS11020 Genome accession   NZ_CP046767
Coordinates   2358906..2359913 (+) Length   335 a.a.
NCBI ID   WP_020429332.1    Uniprot ID   A0AAX2LJL2
Organism   Vibrio fluvialis strain 2013V-1300     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2353906..2364913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY10_RS11000 metJ 2354054..2354371 (+) 318 WP_020329393.1 met regulon transcriptional regulator MetJ -
  GPY10_RS11005 - 2354448..2355725 (-) 1278 WP_024373675.1 malic enzyme-like NAD(P)-binding protein -
  GPY10_RS11010 rpmE 2355937..2356155 (-) 219 WP_020329395.1 50S ribosomal protein L31 -
  GPY10_RS11015 priA 2356401..2358601 (+) 2201 Protein_2109 primosomal protein N' -
  GPY10_RS11020 cytR 2358906..2359913 (+) 1008 WP_020429332.1 DNA-binding transcriptional regulator CytR Regulator
  GPY10_RS11025 ftsN 2360043..2360600 (+) 558 WP_024373673.1 cell division protein FtsN -
  GPY10_RS11030 hslV 2360736..2361290 (+) 555 WP_020329399.1 ATP-dependent protease subunit HslV -
  GPY10_RS11035 hslU 2361332..2362663 (+) 1332 WP_020329400.1 HslU--HslV peptidase ATPase subunit -
  GPY10_RS11040 - 2362752..2363669 (+) 918 WP_020329401.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPY10_RS11045 rraA 2363745..2364272 (+) 528 WP_020329402.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36914.45 Da        Isoelectric Point: 6.3516

>NTDB_id=407421 GPY10_RS11020 WP_020429332.1 2358906..2359913(+) (cytR) [Vibrio fluvialis strain 2013V-1300]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAQIAGPEAAVLCQFRQQGYQQALRRAGITRNPTYSMSGDFTFESGAKAVRQLLALPEPPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TQLVVRESAAPPRSM

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=407421 GPY10_RS11020 WP_020429332.1 2358906..2359913(+) (cytR) [Vibrio fluvialis strain 2013V-1300]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTTTCGACGGCGACGGTCTCGCGCGCTCTGATGAATCCCGAAAA
AGTTTCAGCCTCAACCCGTAAGCGGGTCGAGGAGGCAGTTTTAGAAGCTGGCTATTCACCGAATTCTTTGGCCCGAAATC
TGCGCCGCAATGAGTCAAAAACCATTGTCGCGATAGTGCCGGACATCTGTGACCCTTATTACACAGAGATCATTCGTGGT
ATCGAAGATGCTGCAATGGAACACGGTTATCTGGTGCTGCTGGGCGACAGCGGACAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACCTGGTGTTTACCAAACAAGCGGACGGCATGTTACTGCTGGGGACTGACTTGCCGTTTGATGTGAGCAAACCCG
AGCAGAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTTGCGCCGGAGCTTGAGCTACCTACGGTACACATTGATAAC
CTGACATCGGCGTTTGAAGCCGTGAACTATCTGACTCAGATGGGGCACAAACGTGTGGCACAAATCGCCGGACCGGAAGC
CGCGGTGCTGTGTCAGTTCCGTCAGCAAGGTTATCAGCAGGCGCTGCGTCGTGCGGGTATCACTCGCAATCCGACCTACA
GTATGAGTGGTGACTTTACTTTTGAGTCCGGAGCCAAAGCGGTGCGTCAATTATTGGCCCTGCCTGAGCCACCAACGGCT
ATCTTCTGTCACAACGATACCATGGCGATTGGCGCGATTCAGGAAGCGAAACGTCTGGGACTGCGCGTACCGCAGGATCT
CTCTGTGGTGGGCTTTGATGACATTCAATTCGCCCAGTACTGCGATCCACCGCTGACGACCATCTCTCAGCCTCGCTACG
AGATTGGCCGTCAGGCGATGCTGATGATGCTGGAATTGCTGCGTGGTCATGACGTGCGTGCCGGCTCACGTTTGCTGGAA
ACTCAGCTGGTGGTGCGTGAGAGTGCAGCGCCGCCTCGTTCGATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

94.277

99.104

0.934
  cytR Vibrio parahaemolyticus RIMD 2210633

90.691

99.403

0.901

Multiple sequence alignment