Detailed information NTG0407410

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY10_RS07620
• Genome accession: NZ_CP046767
• Coordinates: 1647094..1648080 (-)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain 2013V-1300
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1642094..1653080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY10_RS07600	recX	1642138..1642596 (-)	459	WP_047459347.1	recombination regulator RecX	-
GPY10_RS07605	recA	1642666..1643718 (-)	1053	WP_020330433.1	recombinase RecA	Machinery gene
GPY10_RS07610	pncC	1643891..1644379 (-)	489	WP_158146859.1	nicotinamide-nucleotide amidase	-
GPY10_RS07615	mutS	1644464..1647025 (+)	2562	WP_158151495.1	DNA mismatch repair protein MutS	-
GPY10_RS07620	rpoS	1647094..1648080 (-)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
GPY10_RS07625	nlpD	1648152..1649087 (-)	936	WP_020429687.1	murein hydrolase activator NlpD	-
GPY10_RS07630	-	1649087..1649713 (-)	627	WP_020429685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY10_RS07635	surE	1649706..1650473 (-)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
GPY10_RS07640	truD	1650466..1651512 (-)	1047	WP_158151496.1	tRNA pseudouridine(13) synthase TruD	-
GPY10_RS07645	ispF	1651544..1652020 (-)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY10_RS07650	ispD	1652023..1652733 (-)	711	WP_020330424.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY10_RS07655	ftsB	1652730..1653011 (-)	282	WP_020330423.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=407410 GPY10_RS07620 WP_020429689.1 1647094..1648080(-) (rpoS) [Vibrio fluvialis strain 2013V-1300]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=407410 GPY10_RS07620 WP_020429689.1 1647094..1648080(-) (rpoS) [Vibrio fluvialis strain 2013V-1300]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGCCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTACTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATTGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCTCTGATGAACCAAACCCGTACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGTTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGTTTTGGCTTGTTGGGCTATGAACCTTCGACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887