Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPY10_RS05640 Genome accession   NZ_CP046767
Coordinates   1213863..1215224 (-) Length   453 a.a.
NCBI ID   WP_158151870.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2013V-1300     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1208863..1220224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY10_RS05605 moaE 1209567..1210022 (-) 456 WP_020327922.1 molybdopterin synthase catalytic subunit MoaE -
  GPY10_RS05610 moaD 1210024..1210269 (-) 246 WP_020327923.1 molybdopterin synthase sulfur carrier subunit -
  GPY10_RS05615 moaC 1210266..1210745 (-) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPY10_RS05620 moaB 1210755..1211267 (-) 513 WP_158151391.1 molybdenum cofactor biosynthesis protein B -
  GPY10_RS05625 moaA 1211339..1212328 (-) 990 WP_199251224.1 GTP 3',8-cyclase MoaA -
  GPY10_RS05630 - 1212639..1213529 (+) 891 WP_020431738.1 YvcK family protein -
  GPY10_RS05635 luxU 1213518..1213856 (-) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  GPY10_RS05640 luxO 1213863..1215224 (-) 1362 WP_158151870.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPY10_RS05645 uvrB 1215511..1217541 (-) 2031 WP_158151393.1 excinuclease ABC subunit UvrB -
  GPY10_RS05655 rsxA 1218430..1219011 (+) 582 WP_004726646.1 electron transport complex subunit RsxA -
  GPY10_RS05660 rsxB 1219011..1219610 (+) 600 WP_020327943.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50291.53 Da        Isoelectric Point: 5.5480

>NTDB_id=407404 GPY10_RS05640 WP_158151870.1 1213863..1215224(-) (luxO) [Vibrio fluvialis strain 2013V-1300]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNQPSESIISVLKASAAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=407404 GPY10_RS05640 WP_158151870.1 1213863..1215224(-) (luxO) [Vibrio fluvialis strain 2013V-1300]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACGCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCACCGCGAACCGGATCTCATCCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGTTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGTAAGCTGAAGAATGAAGCTGACAATCCAGGTAACCAGAATTACCAAGGTTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTTTATCGCACCATTGACTCCGCGGCCAGCAGTAAGGCAAGTATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGTGCGGAAGCGATTCACGCCGCCAGTAGACGCGGCGACAAACCGTTCATTGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAACTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGCACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGCGCGACCAACCGTGACCCATGGAAAGAAGTGCAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTT
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTATTCGCTGCTGGGT
TATATGTCGAAAGAAGAGGGCAAAGGCTTTGTCCGTCTCGCTCCGGAAGTCGTGGAACGTTTTAAACAATACGAATGGCC
GGGTAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAGCATCATCAGTGTACTGAAGGCTAGTGCCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGCGATGGCAATATTCCGCGTGCTGC
CGGCTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.48

98.455

0.901

Multiple sequence alignment