Detailed information NTG0407396

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY10_RS03940
• Genome accession: NZ_CP046767
• Coordinates: 843821..845245 (+)
• Length: 474 a.a.
• NCBI ID: WP_158151202.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain 2013V-1300
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 838821..850245

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY10_RS03915	cobT	838991..840019 (-)	1029	WP_158151200.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY10_RS03920	-	840033..840644 (-)	612	WP_075988634.1	flavin reductase family protein	-
GPY10_RS03925	-	841029..841712 (+)	684	WP_020432563.1	NAD(P)H-binding protein	-
GPY10_RS03930	-	841913..843292 (+)	1380	WP_020432565.1	L-cystine transporter	-
GPY10_RS03935	-	843371..843583 (-)	213	WP_075989234.1	hypothetical protein	-
GPY10_RS03940	sbcB	843821..845245 (+)	1425	WP_158151202.1	exodeoxyribonuclease I	Machinery gene
GPY10_RS03945	-	845286..845660 (+)	375	WP_020327588.1	CidA/LrgA family protein	-
GPY10_RS03950	-	845651..846331 (+)	681	WP_020327589.1	LrgB family protein	-
GPY10_RS03955	cdd	846533..847420 (+)	888	WP_020432570.1	cytidine deaminase	-
GPY10_RS03960	-	847467..850175 (-)	2709	WP_158151204.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54476.95 Da
• Isoelectric Point: 5.1517

>NTDB_id=407396 GPY10_RS03940 WP_158151202.1 843821..845245(+) (sbcB) [Vibrio fluvialis strain 2013V-1300]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDEMPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAVLFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIEPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=407396 GPY10_RS03940 WP_158151202.1 843821..845245(+) (sbcB) [Vibrio fluvialis strain 2013V-1300]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCGGAAGGCATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTCAAACTGGAGCATTTGTCGAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGATGTGATTGC
AACCATTGAACTGGCGAAGAAAGTCAAAGCAGCACAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGATTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGACGAAATGC
CTGTGCCCGTCAAACTGGTCCATCTCAACAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCTGAAATTCGAGAGAAGCTGGC
AGTCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGATGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGTGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.298	99.789	0.831