Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HZT32_RS08825 Genome accession   NZ_CP058874
Coordinates   1876948..1878375 (-) Length   475 a.a.
NCBI ID   WP_073506943.1    Uniprot ID   -
Organism   Escherichia coli strain STLEFF_47     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1871948..1883375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT32_RS08795 (HZT32_08755) yeeZ 1872003..1872827 (+) 825 WP_021559322.1 SDR family oxidoreductase -
  HZT32_RS08800 (HZT32_08760) yeeY 1872873..1873802 (+) 930 WP_024229134.1 LysR substrate-binding domain-containing protein -
  HZT32_RS08805 (HZT32_08765) yoeI 1874017..1874079 (+) 63 WP_010723108.1 membrane protein YoeI -
  HZT32_RS08810 (HZT32_08770) plaP 1874069..1875427 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HZT32_RS08815 (HZT32_08775) tsuA 1875606..1876664 (+) 1059 WP_024229133.1 thiosulfate utilization transporter TsuA/YeeE -
  HZT32_RS08820 (HZT32_08780) tsuB 1876678..1876905 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HZT32_RS08825 (HZT32_08785) sbcB 1876948..1878375 (-) 1428 WP_073506943.1 exodeoxyribonuclease I Machinery gene
  HZT32_RS08830 (HZT32_08790) dacD 1878584..1879750 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HZT32_RS08835 (HZT32_08795) sbmC 1879869..1880342 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HZT32_RS08840 (HZT32_08800) yeeA 1880540..1881598 (+) 1059 WP_064680847.1 FUSC family protein -
  HZT32_RS08845 (HZT32_08805) tmaR 1881770..1882099 (+) 330 WP_000450409.1 DUF496 family protein -
  HZT32_RS08850 (HZT32_08810) - 1882200..1882382 (-) 183 WP_001016349.1 EutP/PduV family microcompartment system protein -
  HZT32_RS08855 (HZT32_08815) - 1882436..1882582 (+) 147 Protein_1739 transposase domain-containing protein -
  HZT32_RS08860 (HZT32_08820) - 1882871..1882951 (-) 81 Protein_1740 hypothetical protein -
  HZT32_RS08865 (HZT32_08825) yeeW 1882997..1883191 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54453.71 Da        Isoelectric Point: 5.4609

>NTDB_id=407382 HZT32_RS08825 WP_073506943.1 1876948..1878375(-) (sbcB) [Escherichia coli strain STLEFF_47]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTHQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=407382 HZT32_RS08825 WP_073506943.1 1876948..1878375(-) (sbcB) [Escherichia coli strain STLEFF_47]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCATCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581