Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY27_RS17190 Genome accession   NZ_CP046762
Coordinates   195390..196571 (-) Length   393 a.a.
NCBI ID   WP_158114120.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM46865     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 190390..201571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY27_RS17175 - 191692..192240 (+) 549 WP_005481267.1 GNAT family N-acetyltransferase -
  GPY27_RS17180 - 192327..192944 (-) 618 WP_140094590.1 HAD family phosphatase -
  GPY27_RS17185 cqsS 193264..195312 (+) 2049 WP_140094591.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY27_RS17190 cqsA 195390..196571 (-) 1182 WP_158114120.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY27_RS17195 ylqF 196927..197871 (-) 945 WP_158114122.1 ribosome biogenesis GTPase YlqF -
  GPY27_RS17200 - 198161..198898 (-) 738 WP_005454086.1 EAL domain-containing protein -
  GPY27_RS17205 - 199078..201312 (-) 2235 WP_199251738.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43870.23 Da        Isoelectric Point: 6.4984

>NTDB_id=407345 GPY27_RS17190 WP_158114120.1 195390..196571(-) (cqsA) [Vibrio parahaemolyticus strain AM46865]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFIGMESCLLSQSGWAANIGLLQTICAPNLPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HMRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=407345 GPY27_RS17190 WP_158114120.1 195390..196571(-) (cqsA) [Vibrio parahaemolyticus strain AM46865]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTATCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACCTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCCCAGATTCATCCTTTCATGCACAACAACATGAAT
CATATGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCGAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.398

98.473

0.575

Multiple sequence alignment