Detailed information NTG0407326

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY27_RS08695
• Genome accession: NZ_CP046761
• Coordinates: 1728502..1729923 (+)
• Length: 473 a.a.
• NCBI ID: WP_140094281.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain AM46865
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1723502..1734923

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY27_RS08675	-	1723561..1724313 (-)	753	WP_031809668.1	adenosylcobinamide-GDP ribazoletransferase	-
GPY27_RS08680	cobT	1724358..1725401 (-)	1044	WP_140094284.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY27_RS08685	-	1726085..1726780 (+)	696	WP_025535821.1	NAD(P)H-binding protein	-
GPY27_RS08690	-	1726973..1728346 (+)	1374	WP_005486634.1	L-cystine transporter	-
GPY27_RS08695	sbcB	1728502..1729923 (+)	1422	WP_140094281.1	exodeoxyribonuclease I	Machinery gene
GPY27_RS08700	-	1729979..1730353 (+)	375	WP_005455074.1	CidA/LrgA family protein	-
GPY27_RS08705	-	1730355..1731032 (+)	678	WP_020840482.1	LrgB family protein	-
GPY27_RS08710	cdd	1731397..1732284 (+)	888	WP_020840481.1	cytidine deaminase	-
GPY27_RS08715	purT	1732432..1733607 (+)	1176	WP_025546268.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
GPY27_RS08720	-	1733709..1734359 (-)	651	WP_005480776.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54642.97 Da
• Isoelectric Point: 4.9813

>NTDB_id=407326 GPY27_RS08695 WP_140094281.1 1728502..1729923(+) (sbcB) [Vibrio parahaemolyticus strain AM46865]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTNLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=407326 GPY27_RS08695 WP_140094281.1 1728502..1729923(+) (sbcB) [Vibrio parahaemolyticus strain AM46865]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCAGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAACCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGTTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAATGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGCCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	80.127	100	0.801