Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SSUD9_RS00210 Genome accession   NC_017620
Coordinates   28913..29695 (+) Length   260 a.a.
NCBI ID   WP_002935335.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23913..34695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS00190 (SSUD9_0021) mreD 24761..25249 (+) 489 WP_009908846.1 rod shape-determining protein MreD -
  SSUD9_RS00195 (SSUD9_0022) pcsB 25334..26590 (+) 1257 WP_002935338.1 peptidoglycan hydrolase PcsB -
  SSUD9_RS00200 (SSUD9_0023) - 26693..27661 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  SSUD9_RS00205 (SSUD9_0024) - 27748..28926 (+) 1179 WP_002935336.1 pyridoxal phosphate-dependent aminotransferase -
  SSUD9_RS00210 (SSUD9_0025) recO 28913..29695 (+) 783 WP_002935335.1 DNA repair protein RecO Machinery gene
  SSUD9_RS00215 (SSUD9_0026) plsX 29692..30699 (+) 1008 WP_002935334.1 phosphate acyltransferase PlsX -
  SSUD9_RS00220 (SSUD9_0027) - 30692..30940 (+) 249 WP_002935333.1 phosphopantetheine-binding protein -
  SSUD9_RS00225 (SSUD9_0028) purC 31058..31765 (+) 708 WP_002935328.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30486.97 Da        Isoelectric Point: 5.4193

>NTDB_id=40732 SSUD9_RS00210 WP_002935335.1 28913..29695(+) (recO) [Streptococcus suis D9]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=40732 SSUD9_RS00210 WP_002935335.1 28913..29695(+) (recO) [Streptococcus suis D9]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGGCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCAAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673

Multiple sequence alignment