Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY27_RS02075 Genome accession   NZ_CP046761
Coordinates   396677..397195 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain AM46865     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 391677..402195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY27_RS02065 gshA 394412..395980 (+) 1569 WP_031830118.1 glutamate--cysteine ligase -
  GPY27_RS02070 - 396005..396610 (+) 606 WP_015297256.1 hypothetical protein -
  GPY27_RS02075 luxS 396677..397195 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  GPY27_RS02080 - 397256..398536 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  GPY27_RS02085 - 398662..399456 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  GPY27_RS02090 ffh 399669..401051 (+) 1383 WP_005462555.1 signal recognition particle protein -
  GPY27_RS02095 rpsP 401261..401509 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY27_RS02100 rimM 401538..402086 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=407317 GPY27_RS02075 WP_005462534.1 396677..397195(+) (luxS) [Vibrio parahaemolyticus strain AM46865]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407317 GPY27_RS02075 WP_005462534.1 396677..397195(+) (luxS) [Vibrio parahaemolyticus strain AM46865]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment