Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY31_RS10775 Genome accession   NZ_CP046760
Coordinates   414304..414822 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain AM51552     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 409304..419822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY31_RS10765 gshA 412039..413607 (+) 1569 WP_015297257.1 glutamate--cysteine ligase -
  GPY31_RS10770 - 413632..414237 (+) 606 WP_015297256.1 hypothetical protein -
  GPY31_RS10775 luxS 414304..414822 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  GPY31_RS10780 - 414883..416163 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  GPY31_RS10785 - 416289..417083 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  GPY31_RS10790 ffh 417296..418678 (+) 1383 WP_005462555.1 signal recognition particle protein -
  GPY31_RS10795 rpsP 418888..419136 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY31_RS10800 rimM 419165..419713 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=407277 GPY31_RS10775 WP_005462534.1 414304..414822(+) (luxS) [Vibrio parahaemolyticus strain AM51552]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407277 GPY31_RS10775 WP_005462534.1 414304..414822(+) (luxS) [Vibrio parahaemolyticus strain AM51552]
ATGCCTTTACTCGATAGCTTCACAGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTCGCTTC
TATGGAAGATGTGCTCAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment