Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | GPY31_RS09485 | Genome accession | NZ_CP046760 |
| Coordinates | 171747..172325 (+) | Length | 192 a.a. |
| NCBI ID | WP_158111731.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain AM51552 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 166747..177325
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY31_RS09470 | oxyR | 167070..167978 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| GPY31_RS09475 | - | 168034..170604 (-) | 2571 | WP_042772654.1 | PBP1A family penicillin-binding protein | - |
| GPY31_RS09480 | pilM | 170747..171763 (+) | 1017 | WP_017449463.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPY31_RS09485 | pilN | 171747..172325 (+) | 579 | WP_158111731.1 | PilN domain-containing protein | Machinery gene |
| GPY31_RS09490 | pilO | 172318..172911 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY31_RS09495 | pilP | 172901..173416 (+) | 516 | WP_015297395.1 | pilus assembly protein PilP | Machinery gene |
| GPY31_RS09500 | pilQ | 173448..175196 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPY31_RS09505 | aroK | 175385..175903 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| GPY31_RS09510 | aroB | 175935..177035 (+) | 1101 | WP_069545880.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22438.91 Da Isoelectric Point: 6.6554
>NTDB_id=407265 GPY31_RS09485 WP_158111731.1 171747..172325(+) (pilN) [Vibrio parahaemolyticus strain AM51552]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNIMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNIMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=407265 GPY31_RS09485 WP_158111731.1 171747..172325(+) (pilN) [Vibrio parahaemolyticus strain AM51552]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACATCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACATCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
82.812 |
100 |
0.828 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |