Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPY20_RS21115 Genome accession   NZ_CP046756
Coordinates   2999440..3000801 (-) Length   453 a.a.
NCBI ID   WP_024373970.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0077     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2994440..3005801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY20_RS21080 moaE 2995144..2995599 (-) 456 WP_020327922.1 molybdopterin synthase catalytic subunit MoaE -
  GPY20_RS21085 moaD 2995601..2995846 (-) 246 WP_020327923.1 molybdopterin synthase sulfur carrier subunit -
  GPY20_RS21090 moaC 2995843..2996322 (-) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPY20_RS21095 moaB 2996332..2996844 (-) 513 WP_158130523.1 molybdenum cofactor biosynthesis protein B -
  GPY20_RS21100 moaA 2996916..2997905 (-) 990 WP_199252516.1 GTP 3',8-cyclase MoaA -
  GPY20_RS21105 - 2998216..2999106 (+) 891 WP_024373971.1 YvcK family protein -
  GPY20_RS21110 luxU 2999095..2999433 (-) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  GPY20_RS21115 luxO 2999440..3000801 (-) 1362 WP_024373970.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPY20_RS21120 uvrB 3001088..3003118 (-) 2031 WP_020431742.1 excinuclease ABC subunit UvrB -
  GPY20_RS21130 - 3004103..3004741 (-) 639 WP_047461914.1 TetR/AcrR family transcriptional regulator -
  GPY20_RS21135 - 3004928..3005794 (+) 867 WP_158130525.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50275.49 Da        Isoelectric Point: 5.5480

>NTDB_id=407257 GPY20_RS21115 WP_024373970.1 2999440..3000801(-) (luxO) [Vibrio fluvialis strain 2015AW-0077]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNQPSESIISVPKASAAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=407257 GPY20_RS21115 WP_024373970.1 2999440..3000801(-) (luxO) [Vibrio fluvialis strain 2015AW-0077]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACGCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCACCGCGAACCGGATCTCATCCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCCGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAACCCAGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTGTACCGCACCATTGACTCTGCGGCCAGCAGTAAGGCAAGCATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAAGTGTGCGCGGAAGCGATTCACGCCGCCAGTAGACGCGGCGACAAACCGTTCATTGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAACTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTCATTCAGACCGGCACCTTCCAGAAAGTCGGATCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGCGCGACCAACCGTGACCCATGGAAAGAAGTACAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTT
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTGATTGAAATTGCCTATTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGCTTTGTCCGTCTCGCTCCGGAAGTCGTAGAACGTTTCAAACAATACGAATGGCC
GGGCAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAGCATCATCAGTGTACCGAAGGCTAGTGCCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGCGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.48

98.455

0.901

Multiple sequence alignment