Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY20_RS11435 Genome accession   NZ_CP046756
Coordinates   949739..950746 (+) Length   335 a.a.
NCBI ID   WP_020429332.1    Uniprot ID   A0AAX2LJL2
Organism   Vibrio fluvialis strain 2015AW-0077     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 944739..955746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY20_RS11415 metJ 944886..945203 (+) 318 WP_020329393.1 met regulon transcriptional regulator MetJ -
  GPY20_RS11420 - 945280..946557 (-) 1278 WP_024373675.1 malic enzyme-like NAD(P)-binding protein -
  GPY20_RS11425 rpmE 946769..946987 (-) 219 WP_020329395.1 50S ribosomal protein L31 -
  GPY20_RS11430 priA 947233..949434 (+) 2202 WP_158129940.1 primosomal protein N' -
  GPY20_RS11435 cytR 949739..950746 (+) 1008 WP_020429332.1 DNA-binding transcriptional regulator CytR Regulator
  GPY20_RS11440 ftsN 950876..951433 (+) 558 WP_024373673.1 cell division protein FtsN -
  GPY20_RS11445 hslV 951569..952123 (+) 555 WP_020329399.1 ATP-dependent protease subunit HslV -
  GPY20_RS11450 hslU 952165..953496 (+) 1332 WP_020329400.1 HslU--HslV peptidase ATPase subunit -
  GPY20_RS11455 - 953585..954502 (+) 918 WP_020329401.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPY20_RS11460 rraA 954578..955105 (+) 528 WP_020329402.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36914.45 Da        Isoelectric Point: 6.3516

>NTDB_id=407236 GPY20_RS11435 WP_020429332.1 949739..950746(+) (cytR) [Vibrio fluvialis strain 2015AW-0077]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAQIAGPEAAVLCQFRQQGYQQALRRAGITRNPTYSMSGDFTFESGAKAVRQLLALPEPPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TQLVVRESAAPPRSM

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=407236 GPY20_RS11435 WP_020429332.1 949739..950746(+) (cytR) [Vibrio fluvialis strain 2015AW-0077]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTTTCGACGGCGACGGTCTCGCGCGCTCTGATGAATCCCGAAAA
AGTTTCAGCCTCAACCCGTAAGCGGGTCGAGGAGGCAGTTTTAGAAGCTGGCTATTCACCGAATTCTTTGGCCCGAAATC
TGCGCCGCAATGAGTCAAAAACCATTGTCGCGATAGTGCCGGACATCTGTGACCCTTATTACACAGAGATCATTCGTGGT
ATCGAAGATGCTGCAATGGAACACGGTTATCTGGTGCTGCTGGGCGACAGCGGACAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACCTGGTGTTTACCAAACAAGCGGACGGCATGTTACTGCTGGGGACTGACTTGCCGTTTGATGTGAGCAAACCCG
AGCAGAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTTGCGCCGGAGCTTGAGCTACCTACGGTACACATTGATAAC
CTGACATCGGCGTTTGAAGCCGTGAACTATCTGACTCAGATGGGGCACAAGCGCGTGGCGCAAATCGCCGGACCGGAAGC
CGCGGTGCTGTGTCAGTTCCGTCAGCAAGGTTATCAGCAGGCGCTGCGTCGTGCGGGTATCACTCGCAATCCGACCTACA
GTATGAGTGGTGACTTTACTTTTGAGTCCGGAGCCAAAGCGGTGCGTCAATTATTGGCCCTGCCTGAGCCACCAACGGCT
ATCTTCTGTCACAACGATACCATGGCGATTGGCGCGATTCAGGAAGCGAAACGTCTGGGACTGCGCGTACCGCAGGATCT
CTCTGTGGTGGGCTTTGATGACATTCAATTCGCCCAGTACTGCGATCCACCGCTGACGACCATCTCTCAGCCTCGCTACG
AGATTGGCCGTCAGGCGATGCTGATGATGCTGGAATTGCTGCGTGGTCATGACGTGCGTGCCGGCTCACGTTTGCTGGAA
ACTCAGCTGGTGGTGCGTGAGAGTGCAGCGCCGCCTCGTTCGATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

94.277

99.104

0.934
  cytR Vibrio parahaemolyticus RIMD 2210633

90.691

99.403

0.901

Multiple sequence alignment